Biomass, Environment, Adaptation and Metabolism

Batailler B, Lemaitre T, Vilaine F, Sanchez C, Renard D, Cayla T, Beneteau J, Dinant S (2012). Soluble and filamentous proteins in Arabidopsis sieve elements. Plant Cell Environ, 35:1258-1273. PubMed | DOI

Castelain M, Le Hir R, Bellini C (2012). The non-DNA-binding bHLH transcription factor PRE3/bHLH135/ATBS1/TMO7 is involved in the regulation of light signaling pathway in Arabidopsis. Physiol Plant, 145:450-460. PubMed | DOI

Gutierrez L, Mongelard G, Flokova K, Pacurar DI, Novák O, Staswick P, Kowalczyk M, Pacurar M, Demailly H, Geiss G, Bellini C (2012). Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell, 24:2515-2527. PubMed | DOI

Mounet F, Moing A, Kowalczyk M, Rohrmann J, Petit J, Garcia V, Maucourt M, Yano K, Deborde C, Aoki K, Berges H, Granell A, Fernie AR, Bellini C, Rothan C, Lemaire-Chamley M (2012). Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development. J Exp Bot, 63:4901-4917. PubMed | DOI

Pacurar DI, Pacurar ML, Street N, Bussell JD, Pop TI, Gutierrez L, Bellini C (2012). A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions. J Exp Bot, 63:2491-2501. PubMed | DOI

Rigal A, Yordanov YS, Perrone I, Karlberg A, Tisserant E, Bellini C, Busov VB, Martin F, Kohler A, Bhalerao R, Legué V (2012). The AINTEGUMENTA LIKE1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in poplar. Plant Physiol, 160:1996-2006. PubMed | DOI

Arc E, Chibani K, Grappin P, Jullien M, Godin B, Cueff G, Valot B, Balliau T, Job D, Rajjou L (2012). Cold stratification and exogenous nitrates entail similar functional proteome adjustments during Arabidopsis seed dormancy release. J Proteome Res, 11:5418-5432. PubMed | DOI

Frey A, Effroy D, Lefebvre V, Seo M, Perreau F, Berger A, Séchet J, To A, North HM, Marion-Poll A (2012). Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. Plant J, 70:501-512. PubMed | DOI

Galland M, Job D, Rajjou L (2012). The seed proteome web portal. Front Plant Sci, 3:98. PubMed | DOI

Pochon S, Terrasson E, Guillemette T, Iacomi-Vasilescu B, Georgeault S, Juchaux M, Berruyer R, Debeaujon I, Simoneau P, Campion C (2012). The Arabidopsis thaliana-Alternaria brassicicola pathosystem: A model interaction for investigating seed transmission of necrotrophic fungi. Plant Methods, 8:16. PubMed | DOI

Rajjou L, Duval M, Gallardo K, Catusse J, Bally J, Job C, Job D (2012). Seed germination and vigor. Annu Rev Plant Biol, 63:507-533. PubMed | DOI

Barriere Y, Méchin V, Lefevre B, Maltese S (2012). QTLs for agronomic and cell wall traits in a maize RIL progeny derived from a cross between an old Minnesota13 line and a modern Iodent line. Theor Appl Genet, 125:531-549. PubMed | DOI

Chavigneau H, Goué N, Delaunay S, Courtial A, Jouanin L, Reymond M, Méchin V, Barriere Y (2012). QTL for floral stem lignin content and degradability in three recombinant inbred line (RIL) progenies of Arabidopsis thaliana and search for candidate genes involved in cell wall biosynthesis and degradability. Open Journal of Genetics, 02:7-30. PubMed | DOI

Courtial A, Jourda C, Arribat S, Huguet S, Reymond M, Grima-Pettenati J, Barriere Y (2012). Comparative expression of cell wall related genes in four maize RILs and one parental line of variable lignin content and cell wall degradability. Maydica, 57:56-74. PubMed | DOI

Richet N, Tozo K, Afif D, Banvoy J, Legay S, Dizengremel P, Cabane M (2012). The response to daylight or continuous ozone of phenylpropanoid and lignin biosynthesis pathways in poplar differs between leaves and wood. Planta, 236:727-737. PubMed | DOI

Arkoun M, Jannin L, Laine P, Etienne P, Masclaux-Daubresse C, Citerne S, Garnica M, Garcia-Mina JM, Yvin JC, Ourry A (2012). A physiological and molecular study of the effects of nickel deficiency and phenylphosphorodiamidate (PPD) application on urea metabolism in oilseed rape (Brassica napus L.). Plant and Soil, 362:79-92. PubMed | DOI

Chardon F, Noel V, Masclaux-Daubresse C (2012). Exploring NUE in crops and in Arabidopsis ideotypes to improve yield and seed quality. J Exp Bot, 63:3401-3412. PubMed | DOI

Guiboileau A, Masclaux-Daubresse C (2012). [Autophagic processes in plants: mechanisms, regulation and function]. C R Biol, 335:375-388. PubMed | DOI

Guiboileau A, Yoshimoto K, Soulay F, Bataille MP, Avice JC, Masclaux-Daubresse C (2012). Autophagy machinery controls nitrogen remobilization at the whole-plant level under both limiting and ample nitrate conditions in Arabidopsis. New Phytol, 194:732-740. PubMed | DOI

Yoshimoto K (2012). Beginning to understand autophagy, an intracellular self-degradation system in plants. Plant Cell Physiol, 53:1355-1365. PubMed | DOI

Allais F, Lancelot A, Pion F, Mazeau K, Méry S, Ducrot P (2011). Synthesis, molecular modeling and characterization of new polyphenolic dendronized polymers via ROMP. Polymer Preprints, 52:379. PubMed | DOI

Barakate A, Stephens J, Goldie A, Hunter WN, Marshall D, Hancock RD, Lapierre C, Morreel K, Boerjan W, Halpin C (2011). Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco. Plant Cell, 23:4492-4506. PubMed | DOI

Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cézard L, Le Bris P, Borrega N, Herve J, Blondet E, Balzergue S, Lapierre C, Jouanin L (2011). Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. Plant Cell, 23:1124-1137. PubMed | DOI

Bouxin F, Baumberger S, Renault JH, Dole P (2011). Study of a specific lignin model: gamma-oxidation and how it influences the hydrolysis efficiency of alcohol-aldehyde dehydrogenation copolymers. Bioresour Technol, 102:5567-5573. PubMed | DOI

Cottyn B, Kollmann A, Waffo-Teguo P, Ducrot PH (2011). Rationalization and in vitro modeling of the chemical mechanisms of the enzymatic oxidation of phenolic compounds in planta: from flavonols and stilbenoids to lignins. Chemistry, 17:7282-7287. PubMed | DOI

Culhaoglu T, Zheng D, Méchin V, Baumberger S (2011). Adaptation of the Carrez procedure for the purification of ferulic and p-coumaric acids released from lignocellulosic biomass prior to LC/MS analysis. J Chromatogr B Analyt Technol Biomed Life Sci, 879:3017-3022. PubMed | DOI

Ducrot PH, Allais F, Pla T (2011). An Access to Chiral ?-Benzyl-?-butyrolactones and Its Application to the Synthesis of Enantiopure (+)-Secoisolariciresinol, (-)-Secoisolariciresinol, and (-)-Enterolactone. Synthesis, 2011:1456-1464. PubMed | DOI

Heiss-Blanquet S, Zheng D, Lopes Ferreira N, Lapierre C, Baumberger S (2011). Effect of pretreatment and enzymatic hydrolysis of wheat straw on cell wall composition, hydrophobicity and cellulase adsorption. Bioresour Technol, 102:5938-5946. PubMed | DOI

Louaifi A, Guinault A, Domenek S, Ducruet V, Baumberger S (2011). Valorisation of industrial lignon as additive with antioxidiant properties in PLA. Italian Journal of Food Science, 23:142-145. PubMed | DOI

Richet N, Afif D, Huber F, Pollet B, Banvoy J, El Zein R, Lapierre C, Dizengremel P, Perre P, Cabane M (2011). Cellulose and lignin biosynthesis is altered by ozone in wood of hybrid poplar (Populus tremula x alba). J Exp Bot, 62:3575-3586. PubMed | DOI

Tamasloukht B, Wong Quai Lam MS, Martinez Y, Tozo K, Barbier O, Jourda C, Jauneau A, Borderies G, Balzergue S, Renou JP, Huguet S, Martinant JP, Tatout C, Lapierre C, Barriere Y, Goffner D, Pichon M (2011). Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression. J Exp Bot, 62:3837-3848. PubMed | DOI

Thévenin J, Pollet B, Letarnec B, Saulnier L, Gissot L, Maia-Grondard A, Lapierre C, Jouanin L (2011). The simultaneous repression of CCR and CAD, two enzymes of the lignin biosynthetic pathway, results in sterility and dwarfism in Arabidopsis thaliana. Mol Plant, 4:70-82. PubMed | DOI

Zhang Y, Culhaoglu T, Pollet B, Melin C, Denoue D, Barriere Y, Baumberger S, Méchin V (2011). Impact of lignin structure and cell wall reticulation on maize cell wall degradability. J Agric Food Chem, 59:10129-10135. PubMed | DOI

Proust H, Hoffmann B, Xie X, Yoneyama K, Schaefer DG, Nogué F, Rameau C (2011). Strigolactones regulate protonema branching and act as a quorum sensing-like signal in the moss Physcomitrella patens. Development, 138:1531-1539. PubMed | DOI

Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH, Rakwal R (2011). Plant organelle proteomics: collaborating for optimal cell function. Mass Spectrom Rev, 30:772-853. PubMed | DOI

Gohon Y, Vindigni JD, Pallier A, Wien F, Celia H, Giuliani A, Tribet C, Chardot T, Briozzo P (2011). High water solubility and fold in amphipols of proteins with large hydrophobic regions: oleosins and caleosin from seed lipid bodies. Biochim Biophys Acta, 1808:706-716. PubMed | DOI

Jolivet P, Boulard C, Bellamy A, Valot B, D'Andrea S, Zivy M, Nesi N, Chardot T (2011). Oil body proteins sequentially accumulate throughout seed development in Brassica napus. J Plant Physiol, 168:2015-2020. PubMed | DOI

Kopecný D, Tylichova M, Snegaroff J, Popelkova H, Sebela M (2011). Carboxylate and aromatic active-site residues are determinants of high-affinity binding of omega-aminoaldehydes to plant aminoaldehyde dehydrogenases. FEBS J, 278:3130-3139. PubMed | DOI

Popluechai S, Froissard M, Jolivet P, Breviario D, Gatehouse AM, O'donnell AG, Chardot T, Kohli A (2011). Jatropha curcas oil body proteome and oleosins: L-form JcOle3 as a potential phylogenetic marker. Plant Physiol Biochem, 49:352-356. PubMed | DOI

Vermachova M, Purkrtova Z, Santrucek J, Jolivet P, Chardot T, Kodicek M (2011). New protein isoforms identified within Arabidopsis thaliana seed oil bodies combining chymotrypsin/trypsin digestion and peptide fragmentation analysis. Proteomics, 11:3430-3434. PubMed | DOI

Cañas RA, Amiour N, Quilleré I, Hirel B (2011). An integrated statistical analysis of the genetic variability of nitrogen metabolism in the ear of three maize inbred lines (Zea mays L.). J Exp Bot, 62:2309-2318. PubMed | DOI

Hirel B, Tétu T, Lea PJ, Dubois F (2011). Improving Nitrogen Use Efficiency in Crops for Sustainable Agriculture. Sustainability, 3:1452-1485. PubMed | DOI

Roux F, Colome-Tatche M, Edelist C, Wardenaar R, Guerche P, Hospital F, Colot V, Jansen RC, Johannes F (2011). Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature. Genetics, 188:1015-1017. PubMed | DOI

Castaings L, Marchive C, Meyer C, Krapp A (2011). Nitrogen signalling in Arabidopsis: how to obtain insights into a complex signalling network. J Exp Bot, 62:1391-1397. PubMed | DOI

Dechorgnat J, Nguyen CT, Armengaud P, Jossier M, Diatloff E, Filleur S, Daniel-Vedele F (2011). From the soil to the seeds: the long journey of nitrate in plants. J Exp Bot, 62:1349-1359. PubMed | DOI

Dobrenel T, Marchive C, Sormani R, Moreau M, Mozzo M, Montane MH, Menand B, Robaglia C, Meyer C (2011). Regulation of plant growth and metabolism by the TOR kinase. Biochem Soc Trans, 39:477-481. PubMed | DOI

Heidari B, Matre P, Nemie-Feyissa D, Meyer C, Rognli OA, Moller SG, Lillo C (2011). Protein phosphatase 2A B55 and A regulatory subunits interact with nitrate reductase and are essential for nitrate reductase activation. Plant Physiol, 156:165-172. PubMed | DOI

Krapp A, Berthomé R, Orsel M, Boutet S, Yu A, Castaings L, Elftieh S, Major H, Renou JP, Daniel-Vedele F (2011). Arabidopsis roots and shoots show distinct temporal adaptation patterns toward nitrogen starvation. Plant Physiol, 157:1255-1282. PubMed | DOI

Matiolli CC, Tomaz JP, Duarte GT, Prado FM, Del Bem LE, Silveira AB, Gauer L, Correa LG, Drumond RD, Viana AJ, Di Mascio P, Meyer C, Vincentz M (2011). The Arabidopsis bZIP gene AtbZIP63 is a sensitive integrator of transient abscisic acid and glucose signals. Plant Physiol, 157:692-705. PubMed | DOI

Sormani R, Masclaux-Daubresse C, Daniel-Vedele F, Chardon F (2011). Transcriptional regulation of ribosome components are determined by stress according to cellular compartments in Arabidopsis thaliana. PLoS One, 6:e28070. PubMed | DOI