Research departments

Biomass, Environment, Adaptation and Metabolism

BEAM 10 research teams

IJPB publications (2006-to date) [858]
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Dobrenel T, Caldana C, Hanson J, Robaglia C, Vincentz M, Veit B, Meyer C (2016). TOR Signaling and Nutrient Sensing. Annu Rev Plant Biol, 67:261-285. PubMed | DOI
Dobrenel T, Mancera-Martinez E, Forzani C, Azzopardi M, Davanture M, Moreau M, Schepetilnikov M, Chicher J, Langella O, Zivy M, Robaglia C, Ryabova LA, Hanson J, Meyer C (2016). The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, 7:1611. PubMed | DOI
Kiba T, Krapp A (2016). Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture. Plant Cell Physiol, 57:707-714. PubMed | DOI
Truong HN, Meyer C (2016). A new NO ledge in Chlamydomonas: when the old nitrate reductase meets amidoxime reducing component to produce nitric oxide. Plant Cell Environ, 39:2095-2096. PubMed | DOI
Yan D, Easwaran V, Chau V, Okamoto M, Ierullo M, Kimura M, Endo A, Yano R, Pasha A, Gong Y, Bi YM, Provart N, Guttman D, Krapp A, Rothstein SJ, Nambara E (2016). NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 7:13179. PubMed | DOI
Zgheib R, Chaillou S, Ouaini N, Kassouf A, Rutledge D, El Azzi D, El Beyrouthy M (2016). Chemometric Tools to Highlight the Variability of the Chemical Composition and Yield of Lebanese Origanum syriacum L. Essential Oil. Chem Biodivers, 13:1326-1347. PubMed | DOI
Zhang Z, Zhu JY, Roh J, Marchive C, Kim SK, Meyer C, Sun Y, Wang W, Wang ZY (2016). TOR Signaling Promotes Accumulation of BZR1 to Balance Growth with Carbon Availability in Arabidopsis. Curr Biol, 26:1854-1860. PubMed | DOI
De Marco F, Pagliari L, Degola F, Buxa SV, Loschi A, Dinant S, Le Hir R, Morin H, Santi S, Musetti R (2016). Combined microscopy and molecular analyses show phloem occlusions and cell wall modifications in tomato leaves in response to 'Candidatus Phytoplasma solani'. J Microsc, 263:212-225. PubMed | DOI
Boccaccini A, Lorrai R, Ruta V, Frey A, Boutet S, Marion-Poll A, Tarkowska D, Strnad M, Costantino P, Vittorioso P (2016). The DAG1 transcription factor negatively regulates the seed-to-seedling transition in Arabidopsis acting on ABA and GA levels. BMC Plant Biol, 16:198. PubMed | DOI
Dekkers BJ, He H, Hanson J, Willems LA, Jamar DC, Cueff G, Rajjou L, Hilhorst HW, Bentsink L (2016). The Arabidopsis DELAY OF GERMINATION 1 gene affects ABSCISIC ACID INSENSITIVE 5 (ABI5) expression and genetically interacts with ABI3 during Arabidopsis seed development. Plant J, 85:451-465. PubMed | DOI
Fendrych M, Leung J, Friml J (2016). TIR1/AFB-Aux/IAA auxin perception mediates rapid cell wall acidification and growth of Arabidopsis hypocotyls. Elife, 5:e19048. PubMed | DOI
Griffiths JS, Crepeau MJ, Ralet MC, Seifert GJ, North HM (2016). Dissecting Seed Mucilage Adherence Mediated by FEI2 and SOS5. Front Plant Sci, 7:1073. PubMed | DOI
Leung J, Bazihizina N, Mancuso S, Valon C (2016). Revisiting the Plant's Dilemma. Mol Plant, 9:7-9. PubMed | DOI
Ralet MC, Crepeau MJ, Vigouroux J, Tran J, Berger A, Sallé C, Granier F, Botran L, North HM (2016). Xylans Provide the Structural Driving Force for Mucilage Adhesion to the Arabidopsis Seed Coat. Plant Physiol, 171:165-178. PubMed | DOI
Sano N, Rajjou L, North HM, Debeaujon I, Marion-Poll A, Seo M (2016). Staying Alive: Molecular Aspects of Seed Longevity. Plant Cell Physiol, 57:660-674. PubMed | DOI
Séchet J, Frey A, Effroy-Cuzzi D, Berger A, Perreau F, Cueff G, Charif D, Rajjou L, Mouille G, North HM, Marion-Poll A (2016). Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination. Plant Physiol, 170:1367-1380. PubMed | DOI
Seo M, Kanno Y, Frey A, North HM, Marion-Poll A (2016). Dissection of Arabidopsis NCED9 promoter regulatory regions reveals a role for ABA synthesized in embryos in the regulation of GA-dependent seed germination. Plant Sci, 246:91-97. PubMed | DOI
Voiniciuc C, Zimmermann E, Schmidt MH, Gunl M, Fu L, North HM, Usadel B (2016). Extensive Natural Variation in Arabidopsis Seed Mucilage Structure. Front Plant Sci, 7:803. PubMed | DOI
Avila-Ospina L, Marmagne A, Soulay F, Masclaux-Daubresse C (2016). Identification of Barley (Hordeum vulgare L.) Autophagy Genes and Their Expression Levels during Leaf Senescence, Chronic Nitrogen Limitation and in Response to Dark Exposure. Agronomy, 6:15. PubMed | DOI
Gaufichon L, Marmagne A, Yoneyama T, Hase T, Clément G, Trassaert M, Xu X, Shakibaei M, Najihi A, Suzuki A (2016). Impact of the Disruption of ASN3-Encoding Asparagine Synthetase on Arabidopsis Development. Agronomy, 6:12. PubMed | DOI
Gaufichon L, Rothstein SJ, Suzuki A (2016). Asparagine Metabolic Pathways in Arabidopsis. Plant Cell Physiol, 57:675-689. PubMed | DOI
Hachiya T, Ueda N, Kitagawa M, Hanke G, Suzuki A, Hase T, Sakakibara H (2016). Arabidopsis Root-Type Ferredoxin:NADP(H) Oxidoreductase 2 is Involved in Detoxification of Nitrite in Roots. Plant Cell Physiol, 57:2440-2450. PubMed | DOI
Masclaux-Daubresse C (2016). Autophagy controls carbon, nitrogen, and redox homeostasis in plants. Autophagy, 12:896-897. PubMed | DOI
Aguié-Béghin V, Foulon L, Soto P, Crônier D, Corti E, Legée F, Cézard L, Chabbert B, Maillard MN, Huijgen WJ, Baumberger S (2015). Use of food and packaging model matrices to investigate the antioxidant properties of biorefinery grass lignins. J Agric Food Chem, 63:10022-10031. PubMed | DOI
Barbara I, Flourat A, Allais F (2015). Renewable polymers derived from ferulic acid and biobased diols via ADMET. European Polymer Journal, 62:236-243. PubMed | DOI
Bensussan M, Lefebvre V, Ducamp A, Trouverie J, Gineau E, Fortabat MN, Guillebaux A, Baldy A, Naquin D, Herbette S, Lapierre C, Mouille G, Horlow C, Durand-Tardif M (2015). Suppression of Dwarf and irregular xylem Phenotypes Generates Low-Acetylated Biomass Lines in Arabidopsis. Plant Physiol, 168:452-463. PubMed | DOI
Burge G, Flourat A, Pollet B, Spinnler H, Allais F (2015). 3-Hydroxypropionaldehyde (3-HPA) quantification by HPLC using a synthetic acrolein-free 3-hydroxypropionaldehyde system as analytical standard. RSC Advances, 5:92619-92627. PubMed | DOI
Burge G, Saulou-Berion C, Moussa M, Pollet B, Flourat A, Allais F, Athes V, Spinnler HE (2015). Diversity of Lactobacillus reuteri Strains in Converting Glycerol into 3-Hydroxypropionic Acid. Appl Biochem Biotechnol, 177:923-939. PubMed | DOI
Cottyn B, Rivard M, Majira A, Beauhaire J, Allais F, Martens T, Baumberger S, Ducrot PH (2015). Comparative electrochemical study on monolignols and dimers relevant for the comprehension of the lignification process. Phytochemistry Letters, 13:280-285. PubMed | DOI
Dulermo T, Coze F, Virolle MJ, Méchin V, Baumberger S, Froissard M (2015). Bioconversion of agricultural lignocellulosic residues into branched-chain fatty acids usingStreptomyces lividans. Ocl, 23:A202. PubMed | DOI
Flourat AL, Peru AaM, Teixeira ARS, Brunissen F, Allais F (2015). Chemo-enzymatic synthesis of key intermediates (S)-?-hydroxymethyl-?,?-butenolide and (S)-?-hydroxymethyl-?-butyrolactone via lipase-mediated Baeyer–Villiger oxidation of levoglucosenone. Green Chemistry, 17:404-412. PubMed | DOI
Oulame M, Pion F, Allauddin S, Raju K, Ducrot P, Allais F (2015). Renewable alternating aliphatic-aromatic poly(ester-urethane)s prepared from ferulic acid and bio-based diols. European Polymer Journal, 63:186-193. PubMed | DOI
Wang Y, Bouchabké-Coussa O, Le Bris P, Antelme S, Soulhat C, Gineau E, Dalmais M, Bendahmane A, Morin H, Mouille G, Legée F, Cézard L, Lapierre C, Sibout R (2015). LACCASE5 is required for lignification of the Brachypodium distachyon Culm. Plant Physiol, 168:192-204. PubMed | DOI
De Cuyper C, Fromentin J, Yocgo RE, De Keyser A, Guillotin B, Kunert K, Boyer FD, Goormachtig S (2015). From lateral root density to nodule number, the strigolactone analogue GR24 shapes the root architecture of Medicago truncatula. J Exp Bot, 66:137-146. PubMed | DOI
Lopez-Obando M, Ligerot Y, Bonhomme S, Boyer FD, Rameau C (2015). Strigolactone biosynthesis and signaling in plant development. Development, 142:3615-3619. PubMed | DOI
Ayme L, Jolivet P, Nicaud JM, Chardot T (2015). Molecular Characterization of the Elaeis guineensis Medium-Chain Fatty Acid Diacylglycerol Acyltransferase DGAT1-1 by Heterologous Expression in Yarrowia lipolytica. PLoS One, 10:e0143113. PubMed | DOI
Bouchez I, Pouteaux M, Canonge M, Genet M, Chardot T, Guillot A, Froissard M (2015). Regulation of lipid droplet dynamics in Saccharomyces cerevisiae depends on the Rab7-like Ypt7p, HOPS complex and V1-ATPase. Biol Open, 4:764-775. PubMed | DOI
Boulard C, Bardet M, Chardot T, Dubreucq B, Gromova M, Guillermo A, Miquel M, Nesi N, Yen-Nicolay S, Jolivet P (2015). The structural organization of seed oil bodies could explain the contrasted oil extractability observed in two rapeseed genotypes. Planta, 242:53-68. PubMed | DOI
Deruyffelaere C, Bouchez I, Morin H, Guillot A, Miquel M, Froissard M, Chardot T, D'Andrea S (2015). Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Plant Cell Physiol, 56:1374-1387. PubMed | DOI
Froissard M, Canonge M, Pouteaux M, Cintrat B, Mohand-Oumoussa S, Guillouet SE, Chardot T, Jacques N, Casaregola S (2015). Lipids containing medium-chain fatty acids are specific to post-whole genome duplication Saccharomycotina yeasts. BMC Evol Biol, 15:97. PubMed | DOI
Mameri H, Brossard C, Gaudin JC, Gohon Y, Paty E, Beaudouin E, Moneret-Vautrin DA, Drouet M, Sole V, Wien F, Lupi R, Larre C, Snegaroff J, Denery-Papini S (2015). Structural Basis of IgE Binding to alpha- and gamma-Gliadins: Contribution of Disulfide Bonds and Repetitive and Nonrepetitive Domains. J Agric Food Chem, 63:6546-6554. PubMed | DOI
Purkrtova Z, Chardot T, Froissard M (2015). N-terminus of seed caleosins is essential for lipid droplet sorting but not for lipid accumulation. Arch Biochem Biophys, 579:47-54. PubMed | DOI
Terce-Laforgue T, Clément G, Marchi L, Restivo FM, Lea PJ, Hirel B (2015). Resolving the Role of Plant NAD-Glutamate Dehydrogenase: III. Overexpressing Individually or Simultaneously the Two Enzyme Subunits Under Salt Stress Induces Changes in the Leaf Metabolic Profile and Increases Plant Biomass Production. Plant Cell Physiol, 56:1918-1929. PubMed | DOI
Aznar A, Chen NW, Thomine S, Dellagi A (2015). Immunity to plant pathogens and iron homeostasis. Plant Sci, 240:90-97. PubMed | DOI
Aznar A, Dellagi A (2015). New insights into the role of siderophores as triggers of plant immunity: what can we learn from animals?. J Exp Bot, 66:3001-3010. PubMed | DOI
Aznar A, Patrit O, Berger A, Dellagi A (2015). Alterations of iron distribution in Arabidopsis tissues infected by Dickeya dadantii. Mol Plant Pathol, 16:521-528. PubMed | DOI
Hummel M, Dobrenel T, Cordewener JJ, Davanture M, Meyer C, Smeekens SJ, Bailey-Serres J, America TA, Hanson J (2015). Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. J Proteomics, 128:436-449. PubMed | DOI
Krapp A (2015). Plant nitrogen assimilation and its regulation: a complex puzzle with missing pieces. Curr Opin Plant Biol, 25:115-122. PubMed | DOI
Kravchenko A, Citerne S, Jéhanno I, Bersimbaev RI, Veit B, Meyer C, Leprince AS (2015). Mutations in the Arabidopsis Lst8 and Raptor genes encoding partners of the TOR complex, or inhibition of TOR activity decrease abscisic acid (ABA) synthesis. Biochem Biophys Res Commun, 467:992-997. PubMed | DOI
Ouibrahim L, Rubio AG, Moretti A, Montane MH, Menand B, Meyer C, Robaglia C, Caranta C (2015). Potyviruses differ in their requirement for TOR signalling. J Gen Virol, 96:2898-2903. PubMed | DOI
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