Chanteau A, Quilleré S, Crouset A, Allipra S, Tuquoi U, Perroud PF, Miron S, Dupaigne P, Zinn-Justin S, Nogué F, Kumar R (2025). Moss BRCA2 lacking the canonical DNA-binding domain promotes homologous recombination and binds to DNA. Nucleic Acids Res, 53(17):gkaf856. PubMed | DOI

Sakamoto AN, Yokota Y, Perroud PF, Oshima Y, Nogué F, Hase Y (2025). The model moss Physcomitrium patens relies heavily on homologous recombination to repair DNA double-strand breaks. DNA Repair (Amst), 152:103881. PubMed | DOI

Soulard C, Monfort M, Pillot JP, Géry C, Chauvin L, Morlière S, Lesné A, Sugio A, Pilet-Nayel ML, Rameau C, Nogué F, De Saint Germain A (2025). Efficient and heritable gene editing through CRISPR-Cas9 in Pisum sativum. Plant Biotechnol J, https://doi.org/10.1111/pbi.70091. PubMed | DOI

Tavernier EK, Perroud PF, Lockwood E, Nogué F, McDaniel SF (2024). Establishing CRISPR-Cas9 in the sexually dimorphic moss, Ceratodon purpureus. Plant J, doi: 10.1111/tpj.16946. PubMed | DOI

Calbry J, Goudounet G, Charlot F, Guyon-Debast A, Perroud PF, Nogué F (2024). The SpRY Cas9 variant release the PAM sequence constraint for genome editing in the model plant Physcomitrium patens. Transgenic Res, 33(1-2):67-74. PubMed | DOI

Nogué F, Causse M, Debaeke P, Déjardin A, Lemarié S, Richard G, Rogowsky PM, Caranta C (2024). Can genome editing help transitioning to agroecology ?. iScience, 27(3):109159. PubMed | DOI

Djennane S, Gersch S, Le-Bohec F, Piron MC, Baltenweck R, Lemaire O, Merdinoglu D, Hugueney P, Nogué F, Mestre P (2023). Reduced susceptibility to downy mildew in grapevine plants edited for VvDMR6-1. J Exp Bot, erad487. PubMed | DOI

Perroud PF, Guyon-Debast A, Casacuberta JM, Paul W, Pichon JP, Comeau D, Nogué F (2023). Improved Prime Editing allows for routine predictable gene editing in Physcomitrium patens. J Exp Bot, erad189. PubMed | DOI

Garcias-Morales D, Palomar VM, Charlot F, Nogué F, Covarrubias AA, Reyes JL (2023). N6 -Methyladenosine modification of mRNA contributes to the transition from 2D to 3D growth in the moss Physcomitrium patens. Plant J, doi: 10.1111/tpj.16149. PubMed | DOI

Kuroiwa K, Danilo B, Perrot L, Thenault C, Veillet F, Delacote F, Duchateau F, Nogué F, Mazier M, Gallois JL (2023). An iterative gene-editing strategy broadens eIF4E1 genetic diversity in Solanum lycopersicum and generates resistance to multiple potyvirus isolates. Plant Biotechnol J, doi: 10.1111/pbi.14003. PubMed | DOI

Beraldo C, Guyon-Debast A, Alboresi A, Nogué F, Morosinotto T (2023). Functional analysis of PsbS transmembrane domains through base editing in Physcomitrium patens. Plant J, doi: 10.1111/tpj.16099. PubMed | DOI

Bellec Y, Guyon-Debast A, Francois T, Gissot L, Biot E, Nogué F, Faure JD, Tepfer M (2022). New Flowering and Architecture Traits Mediated by Multiplex CRISPR-Cas9 Gene Editing in Hexaploid Camelina sativa. Agronomy, 12(8): 1873. DOI

Bessoltane N, Charlot F, Guyon-Debast A, Charif D, Mara K, Collonnier C, Perroud PF, Tepfer M, Nogué F (2022). Genome-wide specificity of plant genome editing by both CRISPR-Cas9 and TALEN. Sci Rep, 12(1):9330. PubMed | DOI

Charlot F, Goudounet G, Nogué F, Perroud PF (2022). Physcomitrium patens Protoplasting and Protoplast Transfection. Methods Mol Biol, 2464:3-19. PubMed | DOI

Kuroiwa K, Thenault C, Nogué F, Perrot L, Mazier M, Gallois JL (2022). CRISPR-based knock-out of eIF4E2 in a cherry tomato background successfully recapitulates resistance to pepper veinal mottle virus. Plant Sci, 316:111160. PubMed | DOI

Perroud PF, Guyon-Debast A, Veillet F, Kermarrec MP, Chauvin L, Chauvin JE, Gallois JL, Nogué F (2022). Prime Editing in the model plant Physcomitrium patens and its potential in the tetraploid potato. Plant Sci, 316:111162. PubMed | DOI

Brejšková L, Hála M, Rawat A, Soukupová H, Cvrková F, Charlot F, Nogué F, Haluška S, Žárský V (2021). SEC6 exocyst subunit contributes to multiple steps of growth and development of Physcomitrella (Physcomitrium patens). Plant J, 106(3):831-843. PubMed | DOI

Chauvin L, Sevestre F, Lukan T, Nogué F, Gallois JL, Chauvin JE, Veillet F (2021). Gene Editing in Potato Using CRISPR-Cas9 Technology. Methods Mol Biol, 2354:331-351. PubMed | DOI

Devos Y, Mumford JD, Bonsall MB, Camargo AM, Firbank LG, Glandorf DCM, Nogué F, Paraskevopoulos K, Wimmer EA (2021). Potential use of gene drive modified insects against disease vectors, agricultural pests and invasive species poses new challenges for risk assessment. Crit Rev Biotechnol, 1-17. PubMed | DOI

Fujita T, Nogué F, Rensing SA, Takezawa D, Vidali L (2021). Molecular biology of mosses. Plant Mol Biol, 107(4-5):209-211. PubMed | DOI

Genau AC, Li Z, Renzaglia KS, Fernandez Pozo N, Nogué F, Haas FB, Wilhelmsson PKI, Ullrich KK, Schreiber M, Meyberg R, Grosche C, Rensing SA (2021). HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants. Plant Reprod, 34(2):149-173. PubMed | DOI

Guyon-Debast A, Alboresi A, Terret Z, Charlot F, Berthier F, Vendrell-Mir P, Casacuberta JM, Veillet F, Morosinotto T, Gallois JL, Nogué F (2021). A blueprint for gene function analysis through Base Editing in the model plant Physcomitrium (Physcomitrella) patens. New Phytol, 230(3):1258-1272. PubMed | DOI

Pauliši S, Qin W, Arora Verasztó H, Then C, Alary B, Nogué F, Tsiantis M, Hothorn M, Martínez-García JF (2021). Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO J, 40(1):e104273. PubMed | DOI

Vendrell-Mir P, Perroud PF, Haas FB, Meyberg R, Charlot F, Rensing SA, Nogué F, Casacuberta JM (2021). A vertically transmitted amalgavirus is present in certain accessions of the bryophyte Physcomitrium patens. Plant J, 108(6):1786-1797. PubMed | DOI

Devos Y, Bonsall MB, Firbank LG, Mumford J, Nogué F, Wimmer EA (2020). Gene Drive-Modified Organisms: Developing Practical Risk Assessment Guidance. Trends Biotechnol, S0167-7799(20)30310-3. PubMed | DOI

Trogu S, Ermert AL, Stahl F, Nogué F, Gans T, Hughes J (2020). Multiplex CRISPR-Cas9 mutagenesis of the phytochrome gene family in Physcomitrium (Physcomitrella) patens. Plant Mol Biol. PubMed | DOI

Veillet F, Kermarrec MP, Chauvin L, Chauvin JE, Nogué F (2020). CRISPR-induced indels and base editing using the Staphylococcus aureus Cas9 in potato. PLoS One, 15(8):e0235942. PubMed | DOI

Veillet F, Perrot L, Guyon-Debast A, Kermarrec MP, Chauvin L, Chauvin JE, Gallois JL, Mazier M, Nogué F (2020). Expanding the CRISPR Toolbox in P. patens Using SpCas9-NG Variant and Application for Gene and Base Editing in Solanaceae Crops. Int J Mol Sci, 21:. PubMed | DOI

Vendrell-Mir P, Lopez-Obando M, Nogué F, Casacuberta JM (2020). Different Families of Retrotransposons and DNA Transposons Are Actively Transcribed and May Have Transposed Recently in Physcomitrium (Physcomitrella) patens. Front Plant Sci, 11:1274. PubMed | DOI

Bastet A, Zafirov D, Giovinazzo N, Guyon-Debast A, Nogué F, Robaglia C, Gallois JL (2019). Mimicking natural polymorphism in eIF4E by CRISPR-Cas9 base editing is associated with resistance to potyviruses. Plant Biotechnol J, 17:1736-1750. PubMed | DOI

Danilo B, Perrot L, Mara K, Botton E, Nogué F, Mazier M (2019). Efficient and transgene-free gene targeting using Agrobacterium-mediated delivery of the CRISPR/Cas9 system in tomato. Plant Cell Rep, 38:459-462. PubMed | DOI

Ermert AL, Nogué F, Stahl F, Gans T, Hughes J (2019). CRISPR/Cas9-Mediated Knockout of Physcomitrella patens Phytochromes. Methods Mol Biol, 2026:237-263. PubMed | DOI

Guyon-Debast A, Rossetti P, Charlot F, Epert A, Neuhaus JM, Schaefer DG, Nogué F (2019). The XPF-ERCC1 Complex Is Essential for Genome Stability and Is Involved in the Mechanism of Gene Targeting in Physcomitrella patens. Front Plant Sci, 10:588. PubMed | DOI

Guzman-Zapata D, Sandoval-Vargas JM, Macedo-Osorio KS, Salgado-Manjarrez E, Castrejon-Flores JL, Oliver-Salvador MDC, Duran-Figueroa NV, Nogué F, Badillo-Corona JA (2019). Efficient Editing of the Nuclear APT Reporter Gene in Chlamydomonas reinhardtii via Expression of a CRISPR-Cas9 Module. Int J Mol Sci, 20:1247. PubMed | DOI

Mara K, Charlot F, Guyon-Debast A, Schaefer DG, Collonnier C, Grelon M, Nogué F (2019). POLQ plays a key role in the repair of CRISPR/Cas9-induced double-stranded breaks in the moss Physcomitrella patens. New Phytol, 222:1380-1391. PubMed | DOI

Nogué F, Vergne P, Chevre AM, Chauvin JE, Bouchabké-Coussa O, Déjardin A, Chevreau E, Hibrand-Saint Oyant L, Mazier M, Barret P, Guiderdoni E, Sallaud C, Foucrier S, Devaux P, Rogowsky PM (2019). Crop plants with improved culture and quality traits for food, feed and other uses. Transgenic Res, 28:65-73. PubMed | DOI

Sakai K, Charlot F, Le Saux T, Bonhomme S, Nogué F, Palauqui JC, Fattaccioli J (2019). Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology. Plant Methods, 15:79. PubMed | DOI

Veillet F, Perrot L, Chauvin L, Kermarrec MP, Guyon-Debast A, Chauvin JE, Nogué F, Mazier M (2019). Transgene-Free Genome Editing in Tomato and Potato Plants Using Agrobacterium-Mediated Delivery of a CRISPR/Cas9 Cytidine Base Editor. Int J Mol Sci, 20:402. PubMed | DOI

Danilo B, Perrot L, Botton E, Nogué F, Mazier M (2018). The DFR locus: A smart landing pad for targeted transgene insertion in tomato. PLoS One, 13:e0208395. PubMed | DOI

Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce De Leon I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szovenyi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA (2018). The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. Plant J, 95:168-182. PubMed | DOI

Wiedemann G, Van Gessel N, Kochl F, Hunn L, Schulze K, Maloukh L, Nogué F, Decker EL, Hartung F, Reski R (2018). RecQ Helicases Function in Development, DNA Repair, and Gene Targeting in Physcomitrella patens. Plant Cell, 30:717-736. PubMed | DOI

Collonnier C, Epert A, Mara K, Maclot F, Guyon-Debast A, Charlot F, White C, Schaefer DG, Nogué F (2017). CRISPR-Cas9-mediated efficient directed mutagenesis and RAD51-dependent and RAD51-independent gene targeting in the moss Physcomitrella patens. Plant Biotechnol J, 15:122-131. PubMed | DOI

Collonnier C, Guyon-Debast A, Maclot F, Mara K, Charlot F, Nogué F (2017). Towards mastering CRISPR-induced gene knock-in in plants: Survey of key features and focus on the model Physcomitrella patens. Methods, 121-122:103-117. PubMed | DOI

Morineau C, Bellec Y, Tellier F, Gissot L, Kelemen Z, Nogué F, Faure JD (2017). Selective gene dosage by CRISPR-Cas9 genome editing in hexaploid Camelina sativa. Plant Biotechnol J, 15:729-739. PubMed | DOI

Wang C, Aube F, Planchard N, Quadrado M, Dargel-Graffin C, Nogué F, Mireau H (2017). The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3 end of its 5-half intron. Nucleic Acids Res, 45:6119-6134. PubMed | DOI

Lopez-Obando M, Hoffmann B, Géry C, Guyon-Debast A, Téoulé E, Rameau C, Bonhomme S, Nogué F (2016). Simple and Efficient Targeting of Multiple Genes Through CRISPR-Cas9 in Physcomitrella patens. G3, 6:3647-3653. PubMed | DOI

Nogué F, Mara K, Collonnier C, Casacuberta JM (2016). Genome engineering and plant breeding: impact on trait discovery and development. Plant Cell Rep, 35:1475-1486. PubMed | DOI

Vives C, Charlot F, Mhiri C, Contreras B, Daniel J, Epert A, Voytas DF, Grandbastien MA, Nogué F, Casacuberta JM (2016). Highly efficient gene tagging in the bryophyte Physcomitrella patens using the tobacco (Nicotiana tabacum) Tnt1 retrotransposon. New Phytol, 212:759-769. PubMed | DOI

Von Schwartzenberg K, Lindner AC, Gruhn N, Simura J, Novák O, Strnad M, Gonneau M, Nogué F, Heyl A (2016). CHASE domain-containing receptors play an essential role in the cytokinin response of the moss Physcomitrella patens. J Exp Bot, 67:667-679. PubMed | DOI

Casacuberta JM, Devos Y, Du Jardin P, Ramon M, Vaucheret H, Nogué F (2015). Biotechnological uses of RNAi in plants: risk assessment considerations. Trends Biotechnol, 33:145-147. PubMed | DOI