Chelysheva L, Morin H, Biot E, Nicolas A, Rech P, Da Costa M, Barel L, Laufs P, Palauqui JC (2024). M2WISH: An easy and efficient protocol for whole-mount mRNA in situ hybridization that allows 3D cell resolution of gene expression in Arabidopsis thaliana. Plant J, doi: 10.1111/tpj.16792. PubMed | DOI

Keller D, Stinus S, Umlauf D, Gourbeyre E, Biot E, Olivier N, Mahou P, Beaurepaire E, Andrey P, Crabbe L (2024). Non-random spatial organization of telomeres varies during the cell cycle and requires LAP2 and BAF. iScience, 27(4):109343. PubMed | DOI

Oughou M, Biot E, Arnaud N, Maugarny A, Laufs P, Andrey P, Burguet J (2023). Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis. Quant Plant Biol, 4:e1, 1-11. DOI

Bellec Y, Guyon-Debast A, Francois T, Gissot L, Biot E, Nogué F, Faure JD, Tepfer M (2022). New Flowering and Architecture Traits Mediated by Multiplex CRISPR-Cas9 Gene Editing in Hexaploid Camelina sativa. Agronomy, 12(8): 1873. DOI

Bouré N, Peaucelle A, Goussot M, Adroher B, Soubigou-Taconnat L, Borrega N, Biot E, Tariq Z, Martin-Magniette ML, Pautot V, Laufs P, Arnaud N (2022). A cell wall-associated gene network shapes leaf boundary domains. Development, 149(11):dev200359. PubMed | DOI

Selka F, Burguet J, Biot E, Blein T, Laufs P, Andrey P (2019). Surface parameterization and registration for statistical multiscale atlasing of organ development. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, pp. 134-139, Long Beach, CA. DOI

Oughou M, Cunha E, Biot E, Arnaud N, Laufs P, Andrey P, Burguet J (2019). Dynamic atlasing of gene expression domains from individual images. In 16th IEEE International Symposium on Biomedical Imaging (ISBI 2019): From Nano to Macro, pp. 662-665, Venice, Italy, 8-11 April. DOI

Selka F, Blein T, Burguet J, Biot E, Laufs P, Andrey P (2017). Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis. In Proceedings of the IEEE International Conference on Computer Vision (ICCV), pp. 56-63, Venice, Italy. DOI

Biot E, Cortizo M, Burguet J, Kiss A, Oughou M, Maugarny-Calès A, Goncalves B, Adroher B, Andrey P, Boudaoud A, Laufs P (2016). Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development, 143:3417-3428. PubMed | DOI

Biot E, Crowell E, Burguet J, Höfte H, Vernhettes S, Andrey P (2016). Strategy and software for the statistical spatial analysis of 3D intracellular distributions. Plant J, 87:230-242. PubMed | DOI

Miart F, Desprez T, Biot E, Morin H, Belcram K, Höfte H, Gonneau M, Vernhettes S (2014). Spatio-temporal analysis of cellulose synthesis during cell plate formation in Arabidopsis. Plant J, 77:71-84. PubMed | DOI

Vain T, Crowell EF, Timpano H, Biot E, Desprez T, Mansoori N, Trindade LM, Pagant S, Robert S, Höfte H, Gonneau M, Vernhettes S (2014). The Cellulase KORRIGAN Is Part of the Cellulose Synthase Complex. Plant Physiol, 165:1521-1532. PubMed | DOI

Andrey P, Kieu K, Kress C, Lehmann G, Tirichine L, Liu Z, Biot E, Adenot PG, Hue-Beauvais C, Houba-Herin N, Duranthon V, Devinoy E, Beaujean N, Gaudin V, Maurin Y, Debey P (2010). Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol, 6:e1000853. PubMed | DOI

Simon A, Biot E (2010). ANAIS: analysis of NimbleGen arrays interface. Bioinformatics, 26:2468-2469. PubMed | DOI

Tirichine L, Andrey P, Biot E, Maurin Y, Gaudin V (2009). 3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei. Plant Methods, 5:11. PubMed | DOI

Biot E, Crowell E, Höfte H, Maurin Y, Vernhettes S, Andrey P (2008). A new filter for spot extraction in N-dimensional biological imaging. In Fifth IEEE International Symposium on Biomedical Imaging (ISBI'08): From Nano to Macro, pp. 975-978, Paris, May 14-17. DOI