Dehaene N, Boussardon C, Andrey P, Charif D, Brandt D, Gilouppe Taillefer C, Nietzel T, Ricou A, Simon M, Tran J, Vezon D, Camilleri C, Arimura SI, Schwarzländer M, Budar F (2024). The mitochondrial orf117Sha gene desynchronizes pollen development and causes pollen abortion in Arabidopsis Sha cytoplasmic male sterility. J Exp Bot, 75(16):4851-4872. PubMed | DOI

Cromer L, Tiscareño Andrade M, Lefranc S, Chambon A, Hurel A, Brogniez M, Guérin J, Le Masson I, Adam G, Charif D, Andrey P, Grelon M (2024). Rapid meiotic prophase chromosome movements in Arabidopsis thaliana are linked to essential reorganization at the nuclear envelope. Nat Commun, 15(1):5964. PubMed | DOI

Keller D, Stinus S, Umlauf D, Gourbeyre E, Biot E, Olivier N, Mahou P, Beaurepaire E, Andrey P, Crabbe L (2024). Non-random spatial organization of telomeres varies during the cell cycle and requires LAP2 and BAF. iScience, 27(4):109343. PubMed | DOI

Laruelle E, Palauqui JC, Andrey P, Trubuil A (2023). TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images. Plant Methods, 19(1):128. PubMed | DOI

Oughou M, Biot E, Arnaud N, Maugarny A, Laufs P, Andrey P, Burguet J (2023). Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesis. Quant Plant Biol, 4:e1, 1-11. DOI

Laruelle E, Belcram K, Trubuil A, Palauqui JC, Andrey P (2022). Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis. Elife, 11:e79224. PubMed | DOI

Rampin O, Saint Albin Deliot A, Ouali C, Burguet J, Gry E, Champeil Potokar G, Jérôme N, Davidenko O, Darcel N, Bombail V, Andrey P, Denis I (2022). Dopamine Modulates the Processing of Food Odour in the Ventral Striatum. Biomedicines, 10(5):1126. PubMed | DOI

Arpòn J, Sakai K, Gaudin V, Andrey P (2021). Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin. Sci Rep, 11(1):323. PubMed | DOI

Burguet J, Andrey P (2020). Edge correction for intensity estimation of 3D heterogeneous point processes from replicated data. Spat Stat, 36:100421. DOI

Farmer DGS, Pracejus N, Dempsey B, Turner A, Bokiniec P, Paton JFR, Pickering AE, Burguet J, Andrey P, Goodchild AK, Mcallen RM, Mcmullan S (2019). On the presence and functional significance of sympathetic premotor neurons with collateralized spinal axons in the rat. J Physiol, 597:3407-3423. PubMed | DOI

Moukhtar J, Trubuil A, Belcram K, Legland D, Khadir Z, Urbain A, Palauqui JC, Andrey P (2019). Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. PLoS Comput Biol, 15:e1006771. PubMed | DOI

Selka F, Burguet J, Biot E, Blein T, Laufs P, Andrey P (2019). Surface parameterization and registration for statistical multiscale atlasing of organ development. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, pp. 134-139, Long Beach, CA. DOI

Oughou M, Cunha E, Biot E, Arnaud N, Laufs P, Andrey P, Burguet J (2019). Dynamic atlasing of gene expression domains from individual images. In 16th IEEE International Symposium on Biomedical Imaging (ISBI 2019): From Nano to Macro, pp. 662-665, Venice, Italy, 8-11 April. DOI

Arganda-Carreras I, Manoliu T, Mazuras N, Schulze F, Iglesias JE, Buhler K, Jenett A, Rouyer F, Andrey P (2018). A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. Front Neuroinform, 12:13. PubMed | DOI

Arpòn J, Gaudin V, Andrey P (2018). A Method for Testing Random Spatial Models on Nuclear Object Distributions. Methods Mol Biol, 1675:493-507. PubMed | DOI

Fernandes JB, Duhamel M, Seguela-Arnaud M, Froger N, Girard C, Choinard S, Solier V, De Winne N, De Jaeger G, Gevaert K, Andrey P, Grelon M, Guerois R, Kumar R, Mercier R (2018). FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PLoS Genet, 14:e1007317. PubMed | DOI

Serra L, Arnaud N, Selka F, Rechenmann C, Andrey P, Laufs P (2018). Heterogeneity and its multiscale integration in plant morphogenesis. Curr Opin Plant Biol, 46:18-24. PubMed | DOI

Arganda-Carreras I, Andrey P (2017). Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach. Methods Mol Biol, 1563:185-207. PubMed | DOI

Chehensse C, Facchinetti P, Bahrami S, Andrey P, Soler JM, Chretien F, Bernabe J, Clement P, Denys P, Giuliano F (2017). Human spinal ejaculation generator. Ann Neurol, 81:35-45. PubMed | DOI

Selka F, Blein T, Burguet J, Biot E, Laufs P, Andrey P (2017). Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis. In Proceedings of the IEEE International Conference on Computer Vision (ICCV), pp. 56-63, Venice, Italy. DOI

Biot E, Cortizo M, Burguet J, Kiss A, Oughou M, Maugarny-Calès A, Goncalves B, Adroher B, Andrey P, Boudaoud A, Laufs P (2016). Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development, 143:3417-3428. PubMed | DOI

Biot E, Crowell E, Burguet J, Höfte H, Vernhettes S, Andrey P (2016). Strategy and software for the statistical spatial analysis of 3D intracellular distributions. Plant J, 87:230-242. PubMed | DOI

Legland D, Arganda-Carreras I, Andrey P (2016). MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ. Bioinformatics, 32:3532-3534. PubMed | DOI

Molitor AM, Latrasse D, Zytnicki M, Andrey P, Houba-Herin N, Hachet M, Battail C, Del Prete S, Alberti A, Quesneville H, Gaudin V (2016). The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes. Plant Cell, 28:2197-2211. PubMed | DOI

Poulet A, Arganda-Carreras I, Legland D, Probst AV, Andrey P, Tatout C (2015). NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei. Bioinformatics, 31:1144-1146. PubMed | DOI

Burguet J, Andrey P (2014). Statistical comparison of spatial point patterns in biological imaging. PLoS One, 9:e87759. PubMed | DOI

Del Prete S, Arpòn J, Sakai K, Andrey P, Gaudin V (2014). Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana. Cytogenet Genome Res, 143:28-50. PubMed | DOI

Gul-Mohammed J, Arganda-Carreras I, Andrey P, Galy V, Boudier T (2014). A generic classification-based method for segmentation of nuclei in 3D images of early embryos. BMC Bioinformatics, 15:9. PubMed | DOI

Burguet J, Mailly P, Andrey P (2013). Statistical groupwise comparison of spatial point patterns in biological imaging. In 2013 International Symposium on Biomedical Imaging: From Nano to Macro, pp. 456-459, San Francisco, 7-11 April. DOI

Ernoult-Lange M, Baconnais S, Harper M, Minshall N, Souquere S, Boudier T, Benard M, Andrey P, Pierron G, Kress M, Standart N, Le Cam E, Weil D (2012). Multiple binding of repressed mRNAs by the P-body protein Rck/p54. RNA, 18:1702-1715. PubMed | DOI

Burguet J, Mailly P, Maurin Y, Andrey P (2011). Reconstructing the three-dimensional surface of a branching and merging biological structure from a stack of coplanar contours. In Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011): From Nano to Macro, pp. 602-605, Chicago, March 30-April 2. DOI

Andrey P, Kieu K, Kress C, Lehmann G, Tirichine L, Liu Z, Biot E, Adenot PG, Hue-Beauvais C, Houba-Herin N, Duranthon V, Devinoy E, Beaujean N, Gaudin V, Maurin Y, Debey P (2010). Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol, 6:e1000853. PubMed | DOI

Gaudin V, Andrey P, Devinoy E, Kress C, Kieu K, Beaujean N, Maurin Y, Debey P (2009). Modeling the 3D functional architecture of the nucleus in animal and plant kingdoms. C R Biol, 332:937-946. PubMed | DOI

Tirichine L, Andrey P, Biot E, Maurin Y, Gaudin V (2009). 3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei. Plant Methods, 5:11. PubMed | DOI

Biot E, Crowell E, Höfte H, Maurin Y, Vernhettes S, Andrey P (2008). A new filter for spot extraction in N-dimensional biological imaging. In Fifth IEEE International Symposium on Biomedical Imaging (ISBI'08): From Nano to Macro, pp. 975-978, Paris, May 14-17. DOI