He X, Lopes CD, Pereyra-Bistrain LI, [...], Bouché N, Raynaud C, Latrasse D, Benhamed M (2024). Genetic-epigenetic interplay in the determination of plant 3D genome organization. Nucleic Acids Res, gkae690. PubMed | DOI

An J, Brik-Chaouche R, [...], Bouché N, [....], Benhamed M (2024). An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution. Proc Natl Acad Sci U S A, 121(28):e2400737121. PubMed | DOI

Kumar BKP, Beaubiat S, Yadav CB, Eshed R, Arazi T, Sherman A, Bouché N (2024). Genome wide inherited modifications of the tomato epigenome by trans-activated bacterial CG methyltransferase. Cell Mol Life Sci, 81(1):222. PubMed | DOI

Christophorou N, She W, Long J, Hurel A, Beaubiat S, Idir Y, Tagliaro-Jahns M, Chambon A, Solier V, Vezon D, Grelon M, Feng X, Bouché N, Mézard C (2020). AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization. PLoS Genet, 16:e1008894. PubMed | DOI

Deremetz A, Le Roux C, Idir Y, Brousse C, Agorio A, Gy I, Parker JE, Bouché N (2019). Antagonistic Actions of FPA and IBM2 Regulate Transcript Processing from Genes Containing Heterochromatin. Plant Physiol, 180:392-403. PubMed | DOI

Taochy C, Yu A, Bouché N, Bouteiller N, Elmayan T, Dressel U, Carroll BJ, Vaucheret H (2019). Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis. Nucleic Acids Res, 47:9104-9114. PubMed | DOI

Corem S, Doron-Faigenboim A, Jouffroy O, Maumus F, Arazi T, Bouché N (2018). Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants. Plant Cell, 30:1628-1644. PubMed | DOI

Agorio A, Durand S, Fiume E, Brousse C, Gy I, Simon M, Anava S, Rechavi O, Loudet O, Camilleri C, Bouché N (2017). An Arabidopsis Natural Epiallele Maintained by a Feed-Forward Silencing Loop between Histone and DNA. PLoS Genet, 13:e1006551. PubMed | DOI

Parent JS, Jauvion V, Bouché N, Beclin C, Hachet M, Zytnicki M, Vaucheret H (2015). Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes. Nucleic Acids Res, 43:8464-8475. PubMed | DOI

Brousse C, Liu Q, Beauclair L, Deremetz A, Axtell MJ, Bouché N (2014). A non-canonical plant microRNA target site. Nucleic Acids Res, 42:5270-5279. PubMed | DOI

Coustham V, Vlad D, Deremetz A, Gy I, Cubillos FA, Kerdaffrec E, Loudet O, Bouché N (2014). SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1. PLoS One, 9:e84687. PubMed | DOI

Mathieu O, Bouché N (2014). Interplay between chromatin and RNA processing. Curr Opin Plant Biol, 18:60-65. PubMed | DOI

Durand S, Bouché N, Perez Strand E, Loudet O, Camilleri C (2012). Rapid establishment of genetic incompatibility through natural epigenetic variation. Curr Biol, 22:326-331. PubMed | DOI

Beauclair L, Yu A, Bouché N (2010). microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis. Plant J, 62:454-462. PubMed | DOI

Bouché N (2010). New insights into miR398 functions in Arabidopsis. Plant Signal Behav, 5:684-686. PubMed | DOI

Galon Y, Aloni R, Nachmias D, Snir O, Feldmesser E, Scrase-Field S, Boyce JM, Bouché N, Knight MR, Fromm H (2010). Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis. Planta, 232:165-178. PubMed | DOI

Mallory AC, Hinze A, Tucker MR, Bouché N, Gasciolli V, Elmayan T, Lauressergues D, Jauvion V, Vaucheret H, Laux T (2009). Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing. PLoS Genet, 5:e1000646. PubMed | DOI

Ludewig F, Huser A, Fromm H, Beauclair L, Bouché N (2008). Mutants of GABA transaminase (POP2) suppress the severe phenotype of succinic semialdehyde dehydrogenase (ssadh) mutants in Arabidopsis. PLoS One, 3:e3383. PubMed | DOI

Mallory AC, Bouché N (2008). MicroRNA-directed regulation: to cleave or not to cleave. Trends Plant Sci, 13:359-367. PubMed | DOI

Perez-Hormaeche J, Potet F, Beauclair L, Le Masson I, Courtial B, Bouché N, Lucas H (2008). Invasion of the Arabidopsis genome by the tobacco retrotransposon Tnt1 is controlled by reversible transcriptional gene silencing. Plant Physiol, 147:1264-1278. PubMed | DOI

Ulker B, Peiter E, Dixon DP, Moffat C, Capper R, Bouché N, Edwards R, Sanders D, Knight H, Knight MR (2008). Getting the most out of publicly available T-DNA insertion lines. Plant J, 56:665-677. PubMed | DOI

Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouché N, Gasciolli V, Vaucheret H (2006). DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol, 16:927-932. PubMed | DOI

Bouché N, Lauressergues D, Gasciolli V, Vaucheret H (2006). An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J, 25:3347-3356. PubMed | DOI