Research teams

Epigenetics and small RNAs

epiARN 6 members 71 IJPB publications (2006-to date)

Complete list of publications (since 1987)

2023  

Bazin, Elvira-Matelot, Blein, Jauvion, Bouteiller, Cao, Crespi, Vaucheret (2023) Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting post-transcriptional transgene silencing. Plant Cell. koad091. doi: 10.1093/plcell/koad091.

Sehki, Yu, Elmayan, Vaucheret (2023) TYMV and TRV infect Arabidopsis thaliana by expressing weak suppressors of RNA silencing and inducing host RNASE THREE LIKE1. PLoS Pathogens 19(1):e1010482. doi: 10.1371/journal.ppat.1010482.  

Vaucheret (2023). Epigenetic management of self and non-self: lessons from 40 years of transgenic plants. C R Biolology 345(4):149-174. doi: 10.5802/crbiol.96.

2022
 

Hacquard, Clavel, Baldrich, Lechner, Perez-Salamo, Schepetilnikov, Derrien, Dubois, Hammann, Kuhn, Brun, Bouteiller, Baumberger, Vaucheret, Meyers, and Genschik (2022). The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA. Cell Reports 39, 110671.  

2021  

Butel, Yu, Le Masson, Borges, Elmayan, Taochy, Gursanscky, Cao, Bi, Sawyer, Carroll, and Vaucheret (2021). Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis. Nature Communications 12, 2787.  

Mejias, Bazin, Truong, Chen, Marteu, Bouteiller, Sawa, Crespi, Vaucheret, Abad, Favery, and Quentin (2021). The root-knot nematode effector MiEFF18 interacts with the plant core spliceosomal protein SmD1 required for giant cell formation. New Phytologist 229, 3408-3423.  

2020  

Cao, Gursanscky, Fletcher, Sawyer, Wadia, McKeough, Coleman, Dressel, Taochy, Mitter, Vaucheret, and Carroll (2020). Can-Seq: a PCR and DNA sequencing strategy for identifying new alleles of known and candidate genes. Plant Methods 16, 16.  

Du, Gong, Bosca, Tucker, Vaucheret, and Laux (2020). Dose-Dependent AGO1-Mediated Inhibition of the miRNA165/166 Pathway Modulates Stem Cell Maintenance in Arabidopsis Shoot Apical Meristem. Plant Communications 1, 100002.  

2019  

Chen, Soulay, Saudemont, Elmayan, Marmagne, Masclaux-Daubresse (2019). Overexpression of ATG8 in Arabidopsis Stimulates Autophagic Activity and Increases Nitrogen Remobilization Efficiency and Grain Filling. Plant Cell Physiology, 60:343-352.  

Lange, Ndecky, Gomez-Diaz, Pflieger, Butel, Zumsteg, Kuhn, Piermaria, Chicher, Christie, Karaaslan, Lang, Weigel, Vaucheret, Hammann, and Gagliardi (2019). RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. Nature Communications 10, 3871.  

Michaeli, Clavel, Lechner, Viotti, Wu, Dubois, Hacquard, Derrien, Izquierdo, Lecorbeiller, Bouteiller, De Cilia, Ziegler-Graff, Vaucheret, Galili, and Genschik (2019). The viral F-box protein P0 induces an ER-derived autophagy degradation pathway for the clearance of membrane-bound AGO1. Proc Natl Acad Sci U S A 116, 22872-22883.  

Taochy, Yu, Bouche, Bouteiller, Elmayan, Dressel, Carroll, and Vaucheret (2019). Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis. Nucleic Acids Research 47, 9104-9114.  

2018  

Derrien, Clavel, Baumberger, Iki, Sarazin, Hacquard, Ponce, Ziegler-Graff, Vaucheret, Micol, Voinnet, and Genschik (2018). A Suppressor Screen for AGO1 Degradation by the Viral F-Box P0 Protein Uncovers a Role for AGO DUF1785 in sRNA Duplex Unwinding. Plant Cell 30, 1353-1374.

2017  

Butel, Le Masson, Bouteiller, Vaucheret, Elmayan (2017). sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J 90, 505-519.  

Charbonnel, C., Niazi, A.K., Elvira-Matelot, E., Nowak, E., Zytnicki, M., de Bures, A., Jobet, E., Opsomer, A., Shamandi, N., Nowotny, M., Carapito, C., Reichheld, J.P., Vaucheret, H., and Saez-Vasquez, J. (2017). The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain. Nucleic Acids Research 45, 11891-11907.  

Elvira-Matelot, Martínez de Alba, Vaucheret (21017) Diversity of RNA silencing pathways in plants. in Plant Gene Silencing: Mechansims and applications. Dalmay, T. editor. CABI Biotechnology series.  

Taochy, C., Gursanscky, N.R., Cao, J., Fletcher, S.J., Dressel, U., Mitter, N., Tucker, M.R., Koltunow, A.M.G., Bowman, J.L., Vaucheret, H., and Carroll, B.J. (2017). A Genetic Screen for Impaired Systemic RNAi Highlights the Crucial Role of DICER-LIKE 2. Plant Physiology 175, 1424-1437.  

Wu, Hou, Lee, Lu, Yang, Vaucheret, Chen (2017). DCL2- and RDR6-dependent transitive silencing of SMXL4 and SMXL5 in Arabidopsis dcl4 mutants causes defective phloem transport and carbohydrate over-accumulation. Plant Journal 90, 1064-1078  

2016  

Elvira-Matelot, Hachet, Shamandi, Comella, Saez-Vasquez, Zytnicki, and Vaucheret (2016a). Arabidopsis RNASE THREE LIKE2 Modulates the Expression of Protein-Coding Genes via 24-Nucleotide Small Interfering RNA-Directed DNA Methylation. Plant Cell 28, 406-425.  

Elvira-Matelot, Bardou, Ariel, Jauvion, Bouteiller, Le Masson, Cao, Crespi, and Vaucheret (2016b). The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis. Plant Cell 28, 426-438.  

Hematy, Bellec, Podicheti, Bouteiller, Anne, Morineau, Haslam, Beaudoin, Napier, Mockaitis, Gagliardi, Vaucheret, Lange, and Faure (2016). The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLoS Genetics 12, e1005817.  

2015  

Casacuberta, Devos, du Jardin, Ramon, Vaucheret, Nogue (2015) Biotechnological uses of RNAi in plants: risk assessment considerations. Trends Biotechnol 33: 145-147  

Martinez de Alba, Moreno, Gabriel, Mallory, Christ, Bounon, Balzergue, Aubourg, Gautheret, Crespi, Vaucheret, Maizel (2015) In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs. Nucleic Acids Research 43: 2902-2913  

Parent, Bouteiller, Elmayan, Vaucheret (2015a) Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant Journal 81: 223-232  

Parent, Jauvion, Bouche, Beclin, Hachet, Zytnicki, Vaucheret (2015b) Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes. Nucleic Acids Research 43, 8464-8475  

Shamandi, Zytnicki, Charbonnel, Elvira-Matelot, Bochnakian, Comella, Mallory, Lepere, Saez-Vasquez, and Vaucheret (2015). Plants Encode a General siRNA Suppressor That Is Induced and Suppressed by Viruses. PLoS Biology 13, e1002326.

Vaucheret (2015) Mode of miRNA biogenesis matters. Nature Plants 1: 15019  

Yu, Saudemont, Bouteiller, Elvira-Matelot, Lepere, Parent, Morel, Cao, Elmayan, Vaucheret (2015) Second site mutagenesis of a hypomorphic ago1 allele identifies SKI3 as an endogenous suppressor of PTGS. Plant Physiology  169, 1266-1274.  

2014  

Lang, Zuber, Sement, Chicher, Kuhn, Hammann, Brunaud, Berard, Bouteiller, Balzergue, Aubourg, Martin-Magniette, Vaucheret, Gagliardi (2014) The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. PLoS Genetics 10: e1004564  

2013  

Martinez de Alba, Elvira-Matelot, Vaucheret (2013a) Gene silencing in plants: a diversity of pathways. Biochim Biophys Acta 1829: 1300-1308  
Martinez de Alba, Parent, Vaucheret (2013b) Small RNA-mediated control of development in plants. in Epigenetic Memory and Control in Plants. Grafi, G. and Ohad, N. editors. Signaling and Communication in Plants 18, DOI 10.1007/978-3-642-35227-0_9. Springer-Verlag Berlin Heidelberg, 177-189.  

Moreno, Martinez de Alba, Bardou, Crespi, Vaucheret, Maizel, Mallory (2013) Cytoplasmic and nuclear quality control and turnover of single stranded RNA modulate post-transcriptional gene silencing in plants. Nucleic Acids Research 41, 4699-4708  

Poulsen, Vaucheret, Brodersen (2013) Lessons on RNA Silencing Mechanisms in Plants from Eukaryotic Argonaute Structures. Plant Cell, 25, 22-37.  

Romon, Soustre-Gacougnolle, Schmitt, Perrin, Burdloff, Chevalier, Mutterer, Himber, Zervudacki, Montavon, Zimmermann, Elmayan, Vaucheret, Dunoyer, Masson (2013) RNA silencing is resistant to low-temperature in grapevine. PLoS One 8: e82652  

Vaucheret, Masson, (2013) Les plantes aussi se soignent aux petits ARN. Biofutur 340, 39.  

Zhong, Liu, Jin, Lin, Li, Chen, Yuan, Wang, Huang, Qi, Chen, Vaucheret, Chory, Li, He (2013) Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proc. Natl. Acad. Sci. USA 22, 9176-9179  

2012  

Le Masson, Jauvion, Bouteiller, Rivard, Elmayan, Vaucheret (2012) Mutations in the Arabidopsis H3K4me2/3 Demethylase JMJ14 Suppress Posttranscriptional Gene Silencing by Decreasing Transgene Transcription. Plant Cell 24 : 3603-3612  

Jauvion, Rivard, Bouteiller, Elmayan, Vaucheret (2012) RDR2 partially antagonizes the production of RDR6-dependent siRNA in sensetransgene-mediated PTGS. PLoS One 7, e29785.  

Jouannet, Moreno, Elmayan, Vaucheret, Crespi, Maizel (2012) Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO Journal 31: 1704-1713.  

Parent, Martinez de Alba, Vaucheret (2012) The origin and effect of small RNA signaling in plants. Front Plant Sci 3: 179.  

Vaucheret, Chupeau (2012) Ingested plant miRNAs regulate gene expression in animals. Cell Research 22, 3-5.  

2011   

Hirsch, Misson, Crisp, David, Bayle, Estavillo, Javot, Chiarenza, Mallory, Maizel, Declerck, Pogson, Vaucheret, Crespi, Desnos, Thibaud, Nussaume, Marin (2011). A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLoS One 6, e16724.  

Jauvion, Mallory, Vaucheret (2011) Deciphering post-transcriptional gene silencing pathways through genetic screens. In RNAi technology. Gaur, R.K., Gafni, Y., Sharma, P., and Gupta, V.K. editors, CRC press. Science publishers.  

Martinez de Alba, Jauvion, Mallory, Bouteiller, Vaucheret (2011). The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Research 39, 9339-9344.  

Maunoury, Vaucheret (2011). AGO1 and AGO2 Act Redundantly in miR408-Mediated Plantacyanin Regulation. PLoS One 6, e28729.  

Pelissier, Clavel, Chaparro, Pouch-Pelissier, Vaucheret, Deragon (2011). Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA 17, 1502-1510.  

Vaucheret (2011) 2001, l’odyssée des petits ARN. Biofutur 30, 32-34

Wang, Jovel, Udomporn, Wang, Wu, Li, Gasciolli, Vaucheret, Ding (2011). The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 23, 1625-1638.  
 

2010  

Jauvion, Elmayan, Vaucheret (2010). The conserved RNA trafficking proteins HPR1 and TEX1 are involved in the production of endogenous and exogenous small interfering RNA in Arabidopsis. Plant Cell 22, 2697-2709.  

Mallory, Vaucheret (2010). Form, Function, and Regulation of ARGONAUTE Proteins. Plant Cell 22, 3879-3889.  

Marin, Jouannet, Herz, Lokerse, Weijers, Vaucheret, Nussaume, Crespi, Maizel (2010). miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 22, 1104-1117.  

Yu, Zhai, Bi, Agarwal, Wu, Ding, Meyers, Vaucheret, Chen (2010) siRNA compete with miRNA for methylation by HEN1 in Arabidopsis. EMBO reports  38, 5844-5850  

2009  

Ben Amor, Wirth, Merchan, Laporte, D’aubenton-Carafa, Hirsch, Maizel, Mallory, Lucas, Deragon, Vaucheret, Thermes, Crespi (2009) Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Research 19, 57-69  

Elmayan, Adenot, Gissot, Lauressergues, Gy, Vaucheret (2009) A neomorphic sgs3 allele stabilizing miRNA cleavage products reveals that SGS3 acts as a homodimer. FEBS Journal 276, 835-844  

Mallory, Hinze, Tucker, Bouche, Gasciolli, Elmayan, Lauressergues, Jauvion, Vaucheret, Laux (2009) Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing PLoS Genetics 5, e1000646  

Mallory, Vaucheret (2009) AGO1 homeostasis requires the coordinate action of the miRNA and siRNA pathways. EMBO reports 10, 521-526  

Vaucheret (2009) Regulation of AGO1 involves differential production of 21-nt and 22-nt miR168 species by MIR168a and MIR168b PLoS One  4, e6442.  

2008  

Daxinger, Hunter, Sheikh, Jauvion, Gasciolli, Vaucheret, Matzke, Furner (2008) Unexpected silencing effects from T-DNA tags in Arabidopsis. Trends in Plant Science 13, 4-7  

Mallory, Elmayan, Vaucheret (2008) MicroRNA maturation and action – the expanding roles of ARGONAUTEs. Current Opinion in Plant Biology 11, 560-566  

Meyers, Axtell, Bartel, Bartel, Baulcombe, Bowman, Cao, Carrington, Chen, Green, Griffiths-Jones, Jacobsen, Mallory, Martienssen, Poethig, Qi, Vaucheret, Voinnet, Watanabe, Weigel, Zhu (2008) Criteria for Annotation of Plant MicroRNAs. Plant Cell 20, 3186-3190  

Pouch-Pélissier, Pélissier, Elmayan, Vaucheret, Boko, Jantsch, Deragon (2008) SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genetics  4, e1000096.  

Vaucheret (2008) Plant ARGONAUTES. Trends in Plant Science 13, 350-358  

2007  

Gy*, Gasciolli*, Lauressergues, Morel, Gombert, Proux, Proux, Vaucheret, Mallory (2007) Arabidopsis FIERY1, XRN2 and XRN3 are endogenous RNA silencing suppressors. Plant Cell 19, 3451-3461  

Mourrain, van Blockland, Kooter, Vaucheret (2007) A single transgene locus triggers both transcriptional and post-transcriptional silencing through double-stranded RNA production. Planta 225, 365-379

2006 

Adenot, Elmayan, Lauressergues, Boutet, Bouché, Gasciolli, Vaucheret (2006) DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Current Biology 16, 927-932  

Bouché, Lauressergues, Gasciolli, Vaucheret (2006) An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO Journal 25, 3347-3356  

Mallory, Vaucheret (2006) Functions of plant microRNAs and related small RNAs. Nature Genetics 38, S31-S36  

Rajagopalan, Vaucheret, Trejo, Bartel (2006) A diverse and evolutionarily fluid set of miRNAs in Arabidopsis thaliana. Genes and Development 20, 3407-3425  

Vaucheret (2006) Posttranscriptional small RNA pathways in plants: mechanisms and regulations. Genes & Development 20, 759-771  

Vaucheret, Mallory, Bartel (2006) AGO1 homeostasis entails co-expression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Molecular Cell 22, 129-136  

2005  

Elmayan, Proux, Vaucheret (2005) Arabidopsis RPA2 : a genetic link among transcriptional gene silencing, DNA repair and DNA replication. Current Biology 15, 1919-1925  

Gasciolli*, Mallory*, Bartel, Vaucheret (2005) Partially redundant functions of Arabidopsis Dicer-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Current Biology 15, 1494-1500  

Park, Wu, Gonzalez-Sulser, Vaucheret, Poethig (2005) Nuclear processing and export of miRNAs in Arabidopsis. Proc. Natl. Acad. Sci. USA 102, 3691-3696  

Rocha, Sheikh, Melchiorre, Fagard, Boutet, Loach,  Moffatt,  Wagner,  Vaucheret, Furner (2005) The Arabidopsis HOG1 gene codes for a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. Plant Cell 17, 404-415  

Sorin, Bussell, Camus, Ljung, Kowalczyk, Geiss, McKhann, Garcion, Vaucheret, Sandberg, Bellini (2005) Auxin- and light-control of adventitious rooting in Arabidopsis require ARGONAUTE1. Plant Cell 17, 1343-1359  

Vaucheret (2005) MicroRNA-dependent trans-acting siRNA production. Science STKE 2005, pe43.  

Vaucheret (2005) RNA polymerase IV and transcriptional silencing. Nature Genetics 37, 659-660  

2004
 

Mallory, Vaucheret (2004) MicroRNAs: something important between the genes. Current Opinion in Plant Biololgy 7, 120-125

Muangsan, Beclin, Vaucheret, Robertson (2004) Genetic requirements for geminivirus-mediated VIGS of endogenous genes define a new branch in the plant silencing pathway. Plant Journal 38, 1004-1014`  

Probst, Fagard, Proux, Mourrain, Boutet, Earley, Lawrence, Pikaard, Murfett, Furner, Vaucheret, Mittelstein-Scheid (2004) Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines DNA methylation and nuclear organization of rDNA repeats. Plant Cell 16, 1021-1034

Vaucheret, Vazquez, Crété, Bartel (2004) The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes &Development 18, 1187-1197  

Vazquez*, Vaucheret*, Rajagopalan, Lepers, Gasciolli, Mallory, Hilbert, Bartel, Crété (2004) Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Molecular Cell 16, 69-79   

Vazquez, Gasciolli, Crété, Vaucheret (2004) The nuclear double-stranded RNA-binding protein HYL1 is required for proper microRNA accumulation and plant development but not for post-transcriptional transgene silencing. Current Biology 14, 346-351

2003  

Boutet, Vazquez, Liu, Beclin, Fagard, Gratias, Morel, Crété, Chen, Vaucheret (2003) Arabidopsis HEN1 : a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance. Current Biology 13, 843-848  

2002  

Béclin, Boutet, Waterhouse, Vaucheret (2002) A branched pathway for transgene-induced RNA silencing in plants. Current Biology 12, 684-688  

Mlotshwa, Voinnet, Mette, Matzke, Vaucheret, Ding, Pruss, Vance (2002) RNA silencing and the mobile signal. Plant Cell S289-S301


Morel*, Godon*, Mourrain, Béclin, Boutet, Feuerbach, Proux, Vaucheret (2002) Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell 14, 629-639    

2001  

Béclin, Vaucheret (2001) L'inactivation épigénétique post-transcriptionnelle chez les végétaux: un mécanisme de résistace aux virus. Médecine/Sciences 17, 845-855  

Chandler, Vaucheret (2001) Gene activation and gene silencing. Plant Physiology 125, 145-148  

Mallory, Ely, Smith, Marathe, Anandalakshmi, Fagard, Vaucheret, Pruss, Bowman, Vance (2001) HC-Pro suppression of transgene silencing eliminates the small RNAs but not transgene methylation or the mobile signal . Plant Cell 13, 571-583  

Vance, Vaucheret (2001) RNA silencing in plants - Defense and counterdefense. Science 292, 2277-2280  

Vaucheret, Béclin, Fagard (2001) Post-transcriptional gene silencing in plants. Journal of Cell Science 114, 3083-3091  

Vaucheret, Fagard (2001) Transcriptional gene silencing in plants: targets, inducers and regulators. Trends in Genetics 17, 29-35
 

2000  

Fagard, Boutet, Morel, Bellini, Vaucheret (2000) AGO1, QDE-2 and RDE-1 encode related proteins required for post-transcriptional gene silencing in plants, quelling in fungi and RNA interference in animals. Proc. Natl. Acad. Sci. USA 97, 11650-11654  

Fagard, Vaucheret (2000) Systemic silencing signal(s). Plant Molecular Biology 43, 285-293  

Fagard, Vaucheret (2000) (Trans)gene silencing in plants: how many mechanisms ? Annual Review of Plant Physiology and Plant Molecular Biology 51, 167-194  

Marathe, Smith, Anandalakshmi, Pruss, Bowman, Fagard, Mourrain, Vaucheret, Vance (2000) Plant viral suppressors of post-transcriptional gene silencing do not suppress transcriptional gene silencing. Plant Journal 22, 51-59  

Morel*, Mourrain*, Béclin, Vaucheret (2000) DNA methylation and chromatin structure affect transcriptional and post- transcriptional transgene silencing in Arabidopsis. Current Biology 10, 1591-1594  

Morel, Vaucheret (2000) Post-transcriptional gene silencing mutants. Plant Molecular Biology 43, 275-284  

Mourrain*, Béclin*, Elmayan, Feuerbach, Godon, Morel, Jouette, Lacombe, Nikic, Picault, Rémoué, Sanial, Vo, Vaucheret. (2000) Arabidopsis SGS2 and SGS3 genes required for post-transcriptional gene silencing and virus resistance. Cell 101, 533-542  

Mourrain, Béclin, Vaucheret (2000) Are gene silencing mutants good tools for reliable transgene expression or reliable silencing of endogenous genes in plants ? Genetic Engineering, Principles and Methods  22, 155-170   

1999  

Crété, Vaucheret (1999) Expression and sequence requirements for nitrite reductase co-suppression. Plant Molecular Biology 41, 105-114  

1998
 

Béclin, Berthomé, Palauqui, Tepfer, Vaucheret (1998) Infection of tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of non-viral (trans)genes. Virology 252, 313-317  

Diéguez, Vaucheret, Mittelsten-Scheid, Paszkowski (1998) Cytosine methylation at CG and CNG sites is not a prerequisite for transcriptional gene silencing. Mol Gen Genet 259, 207-215  

Elmayan, Balzergue, Béon, Bourdon, Daubremet, Guénet, Mourrain, Palauqui, Vernhettes, Vialle, Wostrikoff,  Vaucheret (1998) Arabidopsis mutants impaired in cosuppression.  Plant Cell 10, 1747-1758  

Palauqui, Vaucheret (1998) Transgenes are dispensable for the RNA degradation step of co-suppression. Proc Natl Acad Sci USA 95, 9675-9680  

Vaucheret, Béclin, Elmayan, Feuerbach, Godon, Morel, Mourrain, Palauqui, Vernhettes (1998) Transgene-induced gene silencing in plants.  Plant Journal 16, 651-659  

Vaucheret, Elmayan, Thierry, Van der Geest, Hall, Conner, Mlynarova, Nap (1998) Surrounding chicken, bean, yeast or tobacco matrix attachment regions (MARs) do not prevent homology-dependent trans-silencing in transgenic tobacco plants. Mol Gen Genet 259, 388-392  

1997  

English, Davenport, Elmayan, Vaucheret, Baulcombe (1997) Requirement of transcription for homology-dependent virus resistance and transinactivation. Plant Journal 12, 597-603.

Palauqui, Elmayan, Pollien, Vaucheret (1997) Systemic Acquired Silencing: Transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions. EMBO Journal 16, 4738-4745  

Vaucheret, Nussaume, Palauqui, Quilléré, Elmayan (1997) A transcriptionally active state is required for post-transcriptional silencing (co-suppression) of nitrate reductase host genes and transgenes. Plant Cell 9, 1495-1504 
 
Vaucheret, Palauqui, Mourrain, Elmayan (1997) Nitrate reductase and nitrite reductase as targets to study gene silencing phenomena in transgenic plants. Euphytica 93, 195-200  

1996   

Elmayan, Vaucheret (1996) Single copies of a strongly-expressed 35S-driven transgene undergo post-transcriptional silencing. Plant Journal 9, 787-797  

Hervieu, Vaucheret (1996) A single aminoacid change in acetolactate synthase confers resitance to valine in tobacco. Mol Gen Genet 251, 220-224 

Palauqui, Elmayan, Dorlhac de Borne, Crété, Charles, Vaucheret (1996) Frequencies, timing and spatial patterns of co-suppression of nitrate reductase and nitrite reductase in transgenic tobacco plants. Plant Physiology 112, 1447-1456.  

Park, Papp, Moscone, Iglesias, Vaucheret, Matzke, Matzke (1996) Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activity. Plant Journal 9, 183-194  

Thierry, Vaucheret (1996) Sequence homology requirements for transcriptional silencing of 35S transgenes and post-transcriptional silencing of nitrite reductase (trans)genes by the tobacco 271 locus. Plant Molecular Biology 32, 1075-1083.  

Vaucheret, Elmayan, Mourrain, Palauqui (1996) Analysis of a tobacco transgene locus that triggers both transcriptional and post-transcriptional silencing. Ed V.E. Russo, R.A. Martienssen, A.D. Riggs. Cold Spring Harbor Laboratory Press, pp 403-414  

1995  

Palauqui, Vaucheret (1995) Field trial analysis of nitrate reductase co-suppression: a comparative study of 38 combinations of transgene loci. Plant Molecular Biology 29, 149-159  

Vaucheret, Caboche (1995) Induction of nitrate reductase host gene expression has a negative effect on the expression of transgenes driven the nitrate reductase promoter. Plant Science 107, 95-104  

Vaucheret, Mourrain,.Robalo, Pollien (1995) Nitrite reductase silencing as a tool for selecting spontaneous haploid plants. Plant Cell Reports 15, 12-16  

Vaucheret, Palauqui, Elmayan, Moffatt (1995) Molecular and genetic analysis of nitrite reductase co-suppression in transgenic tobacco plants. Mol Gen Genet 248, 311-317  

1994    

Dorlhac de Borne, Vincentz, Chupeau, Vaucheret (1994) Co-suppression of nitrate reductase transgene and host genes in transgenic tobacco plants. Mol Gen Genet 243, 613-621  

Foyer, Lescure, Lefebvre, Vincentz, Vaucheret (1994) Adaptations of photosynthetic electron transport, carbon assimilation and carbon partitioning in transgenic Nicotiana plumbaginifolia plants to changes in nitrate reductase activity. Plant Physiology 104, 171-178 

Vaucheret (1994) Promoter-dependant trans-inactivation in transgenic tobacco: kinetic aspects of gene silencing and gene reactivation. C R Acad Sci Paris, Life Sciences 317, 310-323  

1993  

Foyer, Lefebvre, Provot, Vincentz, Vaucheret (1993) Modulation of nitrogen and carbon metabolism in transformed Nicotiana plumbaginifolia mutant E23 lines expressing either increased or decreased nitrate reductase activity. Aspects of Applied Biology  34, 137-145  

Hamza, Camilleri, Pollien, Vaucheret, Bourgin, Chupeau (1993) Selection for spontaneous tomato haploids using a conditional lethal marker. Theor Appl Genet 86, 657-664  

Kronenberger, Lépingle, Caboche, Vaucheret (1993) Cloning and expression of distincts nitrite reductases in tobacco leaves and roots. Mol Gen Genet  236, 203-208  

Tourneur,  Jouanin, Vaucheret (1993) Over-expression of acetolactate synthase confers resistance to valine in transgenic tobacc. Plant Science 88, 159-168  

Vaucheret (1993) Identification of a general silencer for 19S and 35S promoter in transgenic tobacco: 90 pb of homology in the promoter sequences are sufficient for trans-inactivation. C R Acad Sci Paris, Life Sciences 316, 1471-1483

Vincentz, Moureaux, Leydecker, Vaucheret, Caboche (1993) Regulation of nitrate and nitrite reductase expression in Nicotiana plumbaginifolia leaves by N and C metabolites. Plant Journal  3, 315-324    

1992   

Vaucheret, Kronenberger, Lépingle, Vilaine, Boutin, Caboche (1992) Inhibition of tobacco nitrite reductase activity by expression of antisense RNA. Plant J  2, 559-569  

Vaucheret, Marion-Poll, Meyer, Faure, Marin, Caboche ( 1992)  Interest and limits of reporter genes utilization for the analysis of the transcriptional regulation of nitrate reductase. Mol Gen Genet 235, 259-268  

Vermeulen, Vaucheret, Pautot, Chupeau ( 1992) Agrobacterium mediated transfer of a mutant Arabidopsis  acetolactate synthase gene confer resistance to chlorsulfuron in cichory (Cichorium intibus L.). Plant Cell Reports 11, 243-247  

1990  

Famelaer, Negrutiu, Mouras, Vaucheret, Jacobs (1990) Assymetric hybridization in Nicotiana  by «gamma fusion» and progeny analysis of self-fertile hybrids. Theor Appl Genet 79, 513-520  

Vaucheret, Chabaud, Kronenberger, Caboche (1990) Functionnal complementation of tobacco and Nicotiana plumbaginifolia  nitrate reductase deficient mutants by tranformation with the wild type alleles of the tobacco structural genes. Mol Gen Genet 220, 468-474  

1989  

Pouteau, Chérel, Vaucheret, Caboche (1989) Nitrate reductase mRNA regulation in Nicotiana plumbaginifolia  nitrate reductase deficient mutants. Plant Cell 1, 1111-1120  

Vaucheret, Kronenberger, Rouzé, Caboche (1989) Complete nucleotide sequence of the two tobacco homeologous nitrate reductase genes. Plant Molecular Biology 12, 597-600  

Vaucheret, Vincentz, Kronenberger, Caboche, Rouzé (1989) Molecular cloning and characterization of the two homeologous genes coding for nitrate reductase in tobacco. Mol Gen Genet 216, 10-15  

1988  

Galangau, Chérel, Rouzé, Vaucheret, Vedele, Vincentz, Caboche (1988) Nitrate reductase expression in tobacco and tomato. Curr Top Plant Biochem Physiol 7, 26-34  

1987  

Calza, Huttner, Vincentz, Rouzé, Galangau, Vaucheret, Chérel, Meyer, Kronenberger, Caboche (1987) Cloning of DNA fragments complementary to tobacco nitrate reductase mRNA and encoding epitopes common to the nitrate reductase from higher plants. Mol Gen Genet 209, 552-562  

Vaucheret, Signon, Le Bras, Garel (1987) Mechanism of renaturation of a large protein, asparto-kinase-homoserine deshydrogenase. Biochemistry 26, 2785-2790
Epigenetics and small RNAs

Leader:

Hervé Vaucheret
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