Elmayan T, Blein T, Elvira Matelot E, Le Masson I, Christ A, Bouteiller N, Crespi MD, Vaucheret H (2025). Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA production. Nat Commun, 16(1):2978. PubMed | DOI

Blagojevic A, Baldrich P, Schiaffini M, Lechner E, Baumberger N, Hammann P, Elmayan T, Garcia D, Vaucheret H, Meyers BC, Genschik P (2024). Heat stress promotes Arabidopsis AGO1 phase separation and association with stress granule components. iScience, 27(3):109151. PubMed | DOI

Vaucheret H, Voinnet O (2023). The plant siRNA landscape. Plant Cell, koad253. PubMed | DOI

Bazin J, Elvira Matelot E, Blein T, Jauvion V, Bouteiller N, Cao J, Crespi M, Vaucheret H (2023). Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting post-transcriptional transgene silencing. Plant Cell, koad091. PubMed | DOI

Vaucheret H (2023). Epigenetic management of self and non-self: lessons from 40 years of transgenic plants. C R Biol, 345(4):149-174. PubMed | DOI

Sehki H, Yu A, Elmayan T, Vaucheret H (2023). TYMV and TRV infect Arabidopsis thaliana by expressing weak suppressors of RNA silencing and inducing host RNASE THREE LIKE1. PLoS Pathog, 19(1):e1010482. PubMed | DOI

Hacquard T, Clavel M, Baldrich P, Lechner E, Pérez-Salamó I, Schepetilnikov M, Derrien B, Dubois M, Hammann P, Kuhn L, Brun D, Bouteiller N, Baumberger N, Vaucheret H, Meyers BC, Genschik P (2022). The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA. Cell Rep, 39(2):110671. PubMed | DOI

Huc J, Dziasek K, Pachamuthu K, Woh T, Köhler C, Borges F (2022). Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis. Plant Cell, 34(3):989-1001. PubMed | DOI

Borges F, Donoghue MTA, LeBlanc C, Wear EE, Tanurdži M, Berube B, Brooks A, Thompson WF, Hanley-Bowdoin L, Martienssen RA (2021). Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31(3):591-600. PubMed | DOI

Butel N, Yu A, Le Masson I, Borges F, Elmayan T, Taochy C, Gursanscky NR, Cao J, Bi S, Sawyer A, Carroll BJ, Vaucheret H (2021). Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis. Nat Commun, 12(1):2787. PubMed | DOI

Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D (2021). Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nat Commun, 12(1):410. PubMed | DOI

Lee CH, Hawker NP, Peters JR, Lonhienne TGA, Gursanscky NR, Matthew L, Brosnan CA, Mann CWG, Cromer L, Taochy C, Ngo QA, Sundaresan V, Schenk PM, Kobe B, Borges F, Mercier R, Bowman JL, Carroll BJ (2021). DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis. PLoS Genet, 17(5):e1009561. PubMed | DOI

Mejias J, Bazin J, Truong NM, Chen Y, Marteu N, Bouteiller N, Sawa S, Crespi MD, Vaucheret H, Abad P, Favery B, Quentin M (2021). The root-knot nematode effector MiEFF18 interacts with the plant core spliceosomal protein SmD1 required for giant cell formation. New Phytol, 229(6):3408-3423. PubMed | DOI

Cao J, Gursanscky NR, Fletcher SJ, Sawyer A, Wadia M, Mckeough L, Coleman M, Dressel U, Taochy C, Mitter N, Vaucheret H, Carroll BJ (2020). Can-Seq: a PCR and DNA sequencing strategy for identifying new alleles of known and candidate genes. Plant Methods, 16:16. PubMed | DOI

Chen Q, Soulay F, Saudemont B, Elmayan T, Marmagne A, Masclaux-Daubresse CL (2019). Overexpression of ATG8 in Arabidopsis Stimulates Autophagic Activity and Increases Nitrogen Remobilization Efficiency and Grain Filling. Plant Cell Physiol, 60:343-352. PubMed | DOI

Du F, Gong W, Boscá S, Tucker M, Vaucheret H, Laux T (2019). Dose-Dependent AGO1-Mediated Inhibition of the miRNA165/166 Pathway Modulates Stem Cell Maintenance in Arabidopsis Shoot Apical Meristem. Plant Commun, 1(1):100002. PubMed | DOI

Lange H, Ndecky SYA, Gomez-Diaz C, Pflieger D, Butel N, Zumsteg J, Kuhn L, Piermaria C, Chicher J, Christie M, Karaaslan ES, Lang PLM, Weigel D, Vaucheret H, Hammann P, Gagliardi D (2019). RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. Nat Commun, 10:3871. PubMed | DOI

Michaeli S, Clavel M, Lechner E, Viotti C, Wu J, Dubois M, Hacquard T, Derrien B, Izquierdo E, Lecorbeiller M, Bouteiller N, De Cilia J, Ziegler-Graff V, Vaucheret H, Galili G, Genschik P (2019). The viral F-box protein P0 induces an ER-derived autophagy degradation pathway for the clearance of membrane-bound AGO1. Proc Natl Acad Sci U S A, 116:22872-22883. PubMed | DOI

Taochy C, Yu A, Bouché N, Bouteiller N, Elmayan T, Dressel U, Carroll BJ, Vaucheret H (2019). Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis. Nucleic Acids Res, 47:9104-9114. PubMed | DOI

Derrien B, Clavel M, Baumberger N, Iki T, Sarazin A, Hacquard T, Ponce MR, Ziegler-Graff V, Vaucheret H, Micol JL, Voinnet O, Genschik P (2018). A Suppressor Screen for AGO1 Degradation by the Viral F-Box P0 Protein Uncovers a Role for AGO DUF1785 in sRNA Duplex Unwinding. Plant Cell, 30:1353-1374. PubMed | DOI

Butel N, Le Masson I, Bouteiller N, Vaucheret H, Elmayan T (2017). sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J, 90:505-519. PubMed | DOI

Charbonnel C, Niazi AK, Elvira-Matelot E, Nowak E, Zytnicki M, De Bures A, Jobet E, Opsomer A, Shamandi N, Nowotny M, Carapito C, Reichheld JP, Vaucheret H, Saez-Vasquez J (2017). The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain. Nucleic Acids Res, 45:11891-11907. PubMed | DOI

Taochy C, Gursanscky NR, Cao J, Fletcher SJ, Dressel U, Mitter N, Tucker MR, Koltunow AMG, Bowman JL, Vaucheret H, Carroll BJ (2017). A Genetic Screen for Impaired Systemic RNAi Highlights the Crucial Role of DICER-LIKE 2. Plant Physiol, 175:1424-1437. PubMed | DOI

Wu YY, Hou BH, Lee WC, Lu SH, Yang CJ, Vaucheret H, Chen HM (2017). DCL2- and RDR6-dependent transitive silencing of SMXL4 and SMXL5 in Arabidopsis dcl4 mutants causes defective phloem transport and carbohydrate over-accumulation. Plant J, 90:1064-1078. PubMed | DOI

Elvira-Matelot E, Bardou F, Ariel F, Jauvion V, Bouteiller N, Le Masson I, Cao J, Crespi MD, Vaucheret H (2016). The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis. Plant Cell, 28:426-438. PubMed | DOI

Elvira-Matelot E, Hachet M, Shamandi N, Comella P, Saez-Vasquez J, Zytnicki M, Vaucheret H (2016). Arabidopsis RNASE THREE LIKE2 Modulates the Expression of Protein-Coding Genes via 24-Nucleotide Small Interfering RNA-Directed DNA Methylation. Plant Cell, 28:406-425. PubMed | DOI

Hématy K, Bellec Y, Podicheti R, Bouteiller N, Anne P, Morineau C, Haslam RP, Beaudoin F, Napier JA, Mockaitis K, Gagliardi D, Vaucheret H, Lange H, Faure JD (2016). The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLoS Genet, 12:e1005817. PubMed | DOI

Porter JR, Durand JL, Elmayan T (2016). Gene editing: Edited plants should not be patented. Nature, 530:33. PubMed | DOI

Casacuberta JM, Devos Y, Du Jardin P, Ramon M, Vaucheret H, Nogué F (2015). Biotechnological uses of RNAi in plants: risk assessment considerations. Trends Biotechnol, 33:145-147. PubMed | DOI

Martinez De Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A (2015). In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs. Nucleic Acids Res, 43:2902-2913. PubMed | DOI

Parent JS, Bouteiller N, Elmayan T, Vaucheret H (2015). Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant J, 81:223-232. PubMed | DOI

Parent JS, Jauvion V, Bouché N, Beclin C, Hachet M, Zytnicki M, Vaucheret H (2015). Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes. Nucleic Acids Res, 43:8464-8475. PubMed | DOI

Shamandi N, Zytnicki M, Charbonnel C, Elvira-Matelot E, Bochnakian A, Comella P, Mallory AC, Lepere G, Saez-Vasquez J, Vaucheret H (2015). Plants Encode a General siRNA Suppressor That Is Induced and Suppressed by Viruses. PLoS Biol, 13:e1002326. PubMed | DOI

Vaucheret H (2015). Gene silencing: Mode of miRNA biogenesis matters. Nat Plants, 1:15019. PubMed | DOI

Yu A, Saudemont B, Bouteiller N, Elvira-Matelot E, Lepere G, Parent JS, Morel JB, Cao J, Elmayan T, Vaucheret H (2015). Second-Site Mutagenesis of a Hypomorphic argonaute1 Allele Identifies SUPERKILLER3 as an Endogenous Suppressor of Transgene Posttranscriptional Gene Silencing. Plant Physiol, 169:1266-1274. PubMed | DOI

Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Berard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D (2014). The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. PLoS Genet, 10:e1004564. PubMed | DOI

Martinez De Alba AE, Elvira-Matelot E, Vaucheret H (2013). Gene silencing in plants: a diversity of pathways. Biochim Biophys Acta, 1829:1300-1308. PubMed | DOI

Moreno AB, Martinez De Alba AE, Bardou F, Crespi MD, Vaucheret H, Maizel A, Mallory AC (2013). Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants. Nucleic Acids Res, 41:4699-4708. PubMed | DOI

Poulsen C, Vaucheret H, Brodersen P (2013). Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures. Plant Cell, 25:22-37. PubMed | DOI

Romon M, Soustre-Gacougnolle I, Schmitt C, Perrin M, Burdloff Y, Chevalier E, Mutterer J, Himber C, Zervudacki J, Montavon T, Zimmermann A, Elmayan T, Vaucheret H, Dunoyer P, Masson JE (2013). RNA silencing is resistant to low-temperature in grapevine. PLoS One, 8:e82652. PubMed | DOI

Zhong SH, Liu JZ, Jin H, Lin L, Li Q, Chen Y, Yuan YX, Wang ZY, Huang H, Qi YJ, Chen XY, Vaucheret H, Chory J, Li J, He ZH (2013). Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proc Natl Acad Sci U S A, 110:9171-9176. PubMed | DOI

Jauvion V, Rivard M, Bouteiller N, Elmayan T, Vaucheret H (2012). RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS. PLoS One, 7:e29785. PubMed | DOI

Jouannet V, Moreno AB, Elmayan T, Vaucheret H, Crespi MD, Maizel A (2012). Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J, 31:1704-1713. PubMed | DOI

Le Masson I, Jauvion V, Bouteiller N, Rivard M, Elmayan T, Vaucheret H (2012). Mutations in the Arabidopsis H3K4me2/3 demethylase JMJ14 suppress posttranscriptional gene silencing by decreasing transgene transcription. Plant Cell, 24:3603-3612. PubMed | DOI

Parent JS, Martinez De Alba AE, Vaucheret H (2012). The origin and effect of small RNA signaling in plants. Front Plant Sci, 3:179. PubMed | DOI

Vaucheret H, Chupeau Y (2012). Ingested plant miRNAs regulate gene expression in animals. Cell Res, 22:3-5. PubMed | DOI

Hirsch J, Misson J, Crisp PA, David P, Bayle V, Estavillo GM, Javot H, Chiarenza S, Mallory AC, Maizel A, Declerck M, Pogson BJ, Vaucheret H, Crespi M, Desnos T, Thibaud MC, Nussaume L, Marin E (2011). A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLoS One, 6:e16724. PubMed | DOI

Martinez De Alba AE, Jauvion V, Mallory AC, Bouteiller N, Vaucheret H (2011). The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Res, 39:9339-9344. PubMed | DOI

Maunoury N, Vaucheret H (2011). AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation. PLoS One, 6:e28729. PubMed | DOI

Pelissier T, Clavel M, Chaparro C, Pouch-Pelissier MN, Vaucheret H, Deragon JM (2011). Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA, 17:1502-1510. PubMed | DOI