Génomes

Goelzer A, Rajjou L, Chardon F, Loudet O, Fromion V (2024). Resource allocation modeling for autonomous prediction of plant cell phenotypes. Metab Eng, S1096-7176(24)00054-5. PubMed | DOI

Chen HW, Yeh HY, Chang CC, Kuo WC, Lin SW, Vrielynck N, Grelon M, Chan NL, Chi P (2024). Biochemical characterization of the meiosis-essential yet evolutionarily divergent topoisomerase VIB-like protein MTOPVIB from Arabidopsis thaliana. Nucleic Acids Res, gkae181. PubMed | DOI

Kim H, Kim J, Son N, Kuo P, Morgan C, Chambon A, Byun D, Park J, Lee Y, Park YM, Fozard JA, Guérin J, Hurel A, Lambing C, Howard M, Hwang I, Mercier R, Grelon M, Henderson IR, Choi K (2024). Control of meiotic crossover interference by a proteolytic chaperone network. Nat Plants, doi: 10.1038/s41477-024-01633-y. PubMed | DOI

Wang C, Quadrado M, Mireau H (2024). Temperature-sensitive splicing defects in Arabidopsis mitochondria caused by mutations in the ROOT PRIMORDIUM DEFECTIVE 1 gene. Nucleic Acids Res, gkae072. PubMed | DOI

Nogué F, Causse M, Debaeke P, Déjardin A, Lemarié S, Richard G, Rogowsky PM, Caranta C (2024). Can genome editing help transitioning to agroecology ?. iScience, 27(3):109159. PubMed | DOI

Blagojevic A, Baldrich P, Schiaffini M, Lechner E, Baumberger N, Hammann P, Elmayan T, Garcia D, Vaucheret H, Meyers BC, Genschik P (2024). Heat stress promotes Arabidopsis AGO1 phase separation and association with stress granule components. iScience, 27(3):109151. PubMed | DOI

Djennane S, Gersch S, Le-Bohec F, Piron MC, Baltenweck R, Lemaire O, Merdinoglu D, Hugueney P, Nogué F, Mestre P (2023). Reduced susceptibility to downy mildew in grapevine plants edited for VvDMR6-1. J Exp Bot, erad487. PubMed | DOI

Vrielynck N, Peuch M, Durand S, Lian Q, Chambon A, Hurel A, Guérin J, Guerois R, Mercier R, Grelon M, Mézard C (2023). SCEP1 and SCEP2 are two new components of the synaptonemal complex central element. Nat Plants, doi: 10.1038/s41477-023-01558-y. PubMed | DOI

Shahzad Z, Tournaire-Roux C, Canut M, Adamo M, Roeder J, Verdoucq L, Martiniere A, Amtmann A, Santoni V, Grill E, Loudet O, Maurel C (2023). Protein kinase SnRK2.4 is a key regulator of aquaporins and root hydraulics in Arabidopsis. Plant J, 117: 264-279. PubMed | DOI

Vaucheret H, Voinnet O (2023). The plant siRNA landscape. Plant Cell, koad253. PubMed | DOI

Tran HC, Schmitt V, Lama S, Wang C, Launay-Avon A, Bernfur K, Sultan K, Khan K, Brunaud V, Liehrmann A, Castandet B, Levander F, Rasmusson AG, Mireau H, Delannoy E, van Aken O (2023). An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants. Science, 381(6661):eadg0995. PubMed | DOI

Pachamuthu K, Borges F (2023). Epigenetic control of transposons during plant reproduction: From meiosis to hybrid seeds. Curr Opin Plant Biol, 75:102419. PubMed | DOI

Wang C, Quadrado M, Mireau H (2023). Interplay of endonucleolytic and exonucleolytic processing in the 3'-end formation of a mitochondrial nad2 RNA precursor in Arabidopsis. Nucleic Acids Res, gkad493. PubMed | DOI

Singh DK, Lian Q, Durand S, Fernandes J, Chambon A, Hurel A, Walkemeier B, Solier V, Kumar R, Mercier R (2023). HEIP1 is required for efficient meiotic crossover implementation and is conserved from plants to humans. Proc Natl Acad Sci, 120(23):e2221746120. PubMed | DOI

Perroud PF, Guyon-Debast A, Casacuberta JM, Paul W, Pichon JP, Comeau D, Nogué F (2023). Improved Prime Editing allows for routine predictable gene editing in Physcomitrium patens. J Exp Bot, erad189. PubMed | DOI

Bazin J, Elvira Matelot E, Blein T, Jauvion V, Bouteiller N, Cao J, Crespi M, Vaucheret H (2023). Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting post-transcriptional transgene silencing. Plant Cell, koad091. PubMed | DOI

Sterken MG, Nijveen H, van Zanten M, Jiménez-Gómez JM, Geshnizjani N, Willems LaJ, Rienstra J, Hilhorst HWM, Ligterink W, Snoek BL (2023). Plasticity of maternal environment-dependent expression-QTLs of tomato seeds. Theor Appl Genet, 136(2):28. PubMed | DOI

Garcias-Morales D, Palomar VM, Charlot F, Nogué F, Covarrubias AA, Reyes JL (2023). N6 -Methyladenosine modification of mRNA contributes to the transition from 2D to 3D growth in the moss Physcomitrium patens. Plant J, doi: 10.1111/tpj.16149. PubMed | DOI

Vaucheret H (2023). Epigenetic management of self and non-self: lessons from 40 years of transgenic plants. C R Biol, 345(4):149-174. PubMed | DOI

Elfarargi AF, Gilbault E, Döring N, Neto C, Fulgione A, Weber APM, Loudet O, Hancock AM (2023). Genomic basis of adaptation to a novel precipitation regime. Mol Biol Evol, msad031. PubMed | DOI

Kuroiwa K, Danilo B, Perrot L, Thenault C, Veillet F, Delacote F, Duchateau F, Nogué F, Mazier M, Gallois JL (2023). An iterative gene-editing strategy broadens eIF4E1 genetic diversity in Solanum lycopersicum and generates resistance to multiple potyvirus isolates. Plant Biotechnol J, doi: 10.1111/pbi.14003. PubMed | DOI

Sehki H, Yu A, Elmayan T, Vaucheret H (2023). TYMV and TRV infect Arabidopsis thaliana by expressing weak suppressors of RNA silencing and inducing host RNASE THREE LIKE1. PLoS Pathog, 19(1):e1010482. PubMed | DOI

Beraldo C, Guyon-Debast A, Alboresi A, Nogué F, Morosinotto T (2023). Functional analysis of PsbS transmembrane domains through base editing in Physcomitrium patens. Plant J, doi: 10.1111/tpj.16099. PubMed | DOI

Durand S, Lian Q, Jing J, Ernst M, Grelon M, Zwicker D, Mercier R (2022). Joint control of meiotic crossover patterning by the synaptonemal complex and HEI10 dosage. Nat Commun, 13(1):5999. PubMed | DOI

Bellec Y, Guyon-Debast A, Francois T, Gissot L, Biot E, Nogué F, Faure JD, Tepfer M (2022). New Flowering and Architecture Traits Mediated by Multiplex CRISPR-Cas9 Gene Editing in Hexaploid Camelina sativa. Agronomy, 12(8): 1873. DOI

Shwartz I, Yahav C, Kovetz N, Levy M, Israeli A, Bar M, Duval KL, Krall EG, Teboul N, Jiménez-Gómez JM, Deal RB, Ori N (2022). The VIL gene CRAWLING ELEPHANT controls maturation and differentiation in tomato via polycomb silencing. PLoS Genet, 18(3):e1009633. PubMed | DOI

Bessoltane N, Charlot F, Guyon-Debast A, Charif D, Mara K, Collonnier C, Perroud PF, Tepfer M, Nogué F (2022). Genome-wide specificity of plant genome editing by both CRISPR-Cas9 and TALEN. Sci Rep, 12(1):9330. PubMed | DOI

Charlot F, Goudounet G, Nogué F, Perroud PF (2022). Physcomitrium patens Protoplasting and Protoplast Transfection. Methods Mol Biol, 2464:3-19. PubMed | DOI

Kuroiwa K, Thenault C, Nogué F, Perrot L, Mazier M, Gallois JL (2022). CRISPR-based knock-out of eIF4E2 in a cherry tomato background successfully recapitulates resistance to pepper veinal mottle virus. Plant Sci, 316:111160. PubMed | DOI

Perroud PF, Guyon-Debast A, Veillet F, Kermarrec MP, Chauvin L, Chauvin JE, Gallois JL, Nogué F (2022). Prime Editing in the model plant Physcomitrium patens and its potential in the tetraploid potato. Plant Sci, 316:111162. PubMed | DOI

Hacquard T, Clavel M, Baldrich P, Lechner E, Pérez-Salamó I, Schepetilnikov M, Derrien B, Dubois M, Hammann P, Kuhn L, Brun D, Bouteiller N, Baumberger N, Vaucheret H, Meyers BC, Genschik P (2022). The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA. Cell Rep, 39(2):110671. PubMed | DOI

Huc J, Dziasek K, Pachamuthu K, Woh T, Köhler C, Borges F (2022). Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis. Plant Cell, 34(3):989-1001. PubMed | DOI

Darrier B, Colas I, Rimbert H, Choulet F, Bazile J, Sortais A, Jenczewski E, Sourdille P (2022). Location and Identification on Chromosome 3B of Bread Wheat of Genes Affecting Chiasma Number. Plants, 11(17):2281. PubMed | DOI

Emmenecker C, Mézard C, Kumar R (2022). Repair of DNA double-strand breaks in plant meiosis: role of eukaryotic RecA recombinases and their modulators. Plant Reprod, 36(1):17-41. PubMed | DOI

Grüttner S, Nguyen TT, Bruhs A, Mireau H, Kempken F (2022). The P-type pentatricopeptide repeat protein DWEORG1 is a non-previously reported rPPR protein of Arabidopsis mitochondria. Sci Rep, 12(1):12492. PubMed | DOI

Mireau H (2022). Turning an essential respiratory gene into a cytoplasmic male-sterility factor. Mol Plant, 15(6):931-933. PubMed | DOI

Nguyen TT, Best C, Shevtsov S, Zmudjak M, Quadrado M, Mizrahi R, Zer H, Mireau H, Ostersetzer-Biran O (2022). MISF2 Encodes an Essential Mitochondrial Splicing Cofactor Required for nad2 mRNA Processing and Embryo Development in Arabidopsis thaliana. Int J Mol Sci, 23(5):2670. PubMed | DOI

Simon M, Durand S, Ricou A, Vrielynck N, Mayjonade B, Gouzy J, Boyer R, Roux F, Camilleri C, Budar F (2022). APOK3, a pollen killer antidote in Arabidopsis thaliana. Genetics, 221(4):iyac089. PubMed | DOI

Wang C, Blondel L, Quadrado M, Dargel-Graffin C, Mireau H (2022). Pentatricopeptide repeat protein MTSF3 ensures mitochondrial RNA stability and embryogenesis. Plant Physiol, kiac309. PubMed | DOI

Mhiri C, Borges F, Grandbastien MA (2022). Specificities and Dynamics of Transposable Elements in Land Plants. Biology, 11(4):488. PubMed | DOI

Géry C, Téoulé E (2022). Cold acclimation diversity in Arabidopsis thaliana: CRISPR/Cas9 as a tool to fine analysis of Tandem Gene Arrays, application to CBF genes. Dev Genes Evol. PubMed | DOI

Xiang Y, Sapir T, Rouillard P, Ferrand M, Jiménez-Gómez JM (2022). Interaction between photoperiod and variation in circadian rhythms in tomato. BMC Plant Biol, 22(1):187. PubMed | DOI

Yuste-Lisbona FJ, Jiménez-Gómez JM, Capel C, Lozano R (2021). Effective Mapping by Sequencing to Isolate Causal Mutations in the Tomato Genome. Methods Mol Biol, 2264:89-103. PubMed | DOI

Brejšková L, Hála M, Rawat A, Soukupová H, Cvrková F, Charlot F, Nogué F, Haluška S, Žárský V (2021). SEC6 exocyst subunit contributes to multiple steps of growth and development of Physcomitrella (Physcomitrium patens). Plant J, 106(3):831-843. PubMed | DOI

Chauvin L, Sevestre F, Lukan T, Nogué F, Gallois JL, Chauvin JE, Veillet F (2021). Gene Editing in Potato Using CRISPR-Cas9 Technology. Methods Mol Biol, 2354:331-351. PubMed | DOI

Devos Y, Mumford JD, Bonsall MB, Camargo AM, Firbank LG, Glandorf DCM, Nogué F, Paraskevopoulos K, Wimmer EA (2021). Potential use of gene drive modified insects against disease vectors, agricultural pests and invasive species poses new challenges for risk assessment. Crit Rev Biotechnol, 1-17. PubMed | DOI

Fujita T, Nogué F, Rensing SA, Takezawa D, Vidali L (2021). Molecular biology of mosses. Plant Mol Biol, 107(4-5):209-211. PubMed | DOI

Genau AC, Li Z, Renzaglia KS, Fernandez Pozo N, Nogué F, Haas FB, Wilhelmsson PKI, Ullrich KK, Schreiber M, Meyberg R, Grosche C, Rensing SA (2021). HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants. Plant Reprod, 34(2):149-173. PubMed | DOI

Guyon-Debast A, Alboresi A, Terret Z, Charlot F, Berthier F, Vendrell-Mir P, Casacuberta JM, Veillet F, Morosinotto T, Gallois JL, Nogué F (2021). A blueprint for gene function analysis through Base Editing in the model plant Physcomitrium (Physcomitrella) patens. New Phytol, 230(3):1258-1272. PubMed | DOI

Pauliši S, Qin W, Arora Verasztó H, Then C, Alary B, Nogué F, Tsiantis M, Hothorn M, Martínez-García JF (2021). Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO J, 40(1):e104273. PubMed | DOI