Génomes

Du F, Gong W, Boscá S, Tucker M, Vaucheret H, Laux T (2019). Dose-Dependent AGO1-Mediated Inhibition of the miRNA165/166 Pathway Modulates Stem Cell Maintenance in Arabidopsis Shoot Apical Meristem. Plant Commun, 1(1):100002. PubMed | DOI

Lange H, Ndecky SYA, Gomez-Diaz C, Pflieger D, Butel N, Zumsteg J, Kuhn L, Piermaria C, Chicher J, Christie M, Karaaslan ES, Lang PLM, Weigel D, Vaucheret H, Hammann P, Gagliardi D (2019). RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. Nat Commun, 10:3871. PubMed | DOI

Michaeli S, Clavel M, Lechner E, Viotti C, Wu J, Dubois M, Hacquard T, Derrien B, Izquierdo E, Lecorbeiller M, Bouteiller N, De Cilia J, Ziegler-Graff V, Vaucheret H, Galili G, Genschik P (2019). The viral F-box protein P0 induces an ER-derived autophagy degradation pathway for the clearance of membrane-bound AGO1. Proc Natl Acad Sci U S A, 116:22872-22883. PubMed | DOI

Taochy C, Yu A, Bouché N, Bouteiller N, Elmayan T, Dressel U, Carroll BJ, Vaucheret H (2019). Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis. Nucleic Acids Res, 47:9104-9114. PubMed | DOI

Barrada A, Djendli M, Desnos T, Mercier R, Robaglia C, Montane MH, Menand B (2019). A TOR-YAK1 signaling axis controls cell cycle, meristem activity and plant growth in Arabidopsis. Development, 146:dev171298. PubMed | DOI

Blary A, Jenczewski E (2019). Manipulation of crossover frequency and distribution for plant breeding. Theor Appl Genet, 132:575-592. PubMed | DOI

Cromer L, Jolivet S, Singh DK, Berthier F, De Winne N, De Jaeger G, Komaki S, Prusicki MA, Schnittger A, Guerois R, Mercier R (2019). Patronus is the elusive plant securin, preventing chromosome separation by antagonizing separase. Proc Natl Acad Sci U S A, 116:16018-16027. PubMed | DOI

Forzani C, Duarte GT, Van Leene J, Clément G, Huguet S, Paysant-Le Roux C, Mercier R, De Jaeger G, Leprince AS, Meyer C (2019). Mutations of the AtYAK1 Kinase Suppress TOR Deficiency in Arabidopsis. Cell Rep, 27:3696-3708 e3695. PubMed | DOI

Gonzalo A, Lucas MO, Charpentier C, Sandmann G, Lloyd A, Jenczewski E (2019). Reducing MSH4 copy number prevents meiotic crossovers between non-homologous chromosomes in Brassica napus. Nat Commun, 10:2354. PubMed | DOI

Khanday I, Skinner D, Yang B, Mercier R, Sundaresan V (2019). A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds. Nature, 565:91-95. PubMed | DOI

Kumar R, Duhamel M, Coutant E, Ben-Nahia E, Mercier R (2019). Antagonism between BRCA2 and FIGL1 regulates homologous recombination. Nucleic Acids Res, 47:5170-5180. PubMed | DOI

Lloyd A, Jenczewski E (2019). Modelling Sex-Specific Crossover Patterning in Arabidopsis. Genetics, 211:847-859. PubMed | DOI

Martinez Palacios P, Jacquemot MP, Tapie M, Rousselet A, Diop M, Remoue C, Falque M, Lloyd A, Jenczewski E, Lassalle G, Chevre AM, Lelandais C, Crespi M, Brabant P, Joets J, Alix K (2019). Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids. Mol Biol Evol, 36:709-726. PubMed | DOI

Wang C, Liu Q, Shen Y, Hua Y, Wang J, Lin J, Wu M, Sun T, Cheng Z, Mercier R, Wang K (2019). Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes. Nat Biotechnol, 37:283-286. PubMed | DOI

Boussardon C, Martin-Magniette ML, Godin B, Benamar A, Vittrant B, Citerne S, Mary-Huard T, Macherel D, Rajjou L, Budar F (2019). Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor. Front Plant Sci, 10:32. PubMed | DOI

Waltz F, Nguyen TT, Arrive M, Bochler A, Chicher J, Hammann P, Kuhn L, Quadrado M, Mireau H, Hashem Y, Giege P (2019). Small is big in Arabidopsis mitochondrial ribosome. Nat Plants, 5:106-117. PubMed | DOI

Mhiri C, Parisod C, Daniel J, Petit M, Lim KY, Dorlhac De Borne F, Kovarik A, Leitch AR, Grandbastien MA (2019). Parental transposable element loads influence their dynamics in young Nicotiana hybrids and allotetraploids. New Phytol, 221:1619-1633. PubMed | DOI

Deremetz A, Le Roux C, Idir Y, Brousse C, Agorio A, Gy I, Parker JE, Bouché N (2019). Antagonistic Actions of FPA and IBM2 Regulate Transcript Processing from Genes Containing Heterochromatin. Plant Physiol, 180:392-403. PubMed | DOI

Marchadier E, Hanemian M, Tisne S, Bach L, Bazakos C, Gilbault E, Haddadi P, Virlouvet L, Loudet O (2019). The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana. PLoS Genet, 15:e1007954. PubMed | DOI

Albert E, Duboscq R, Latreille M, Santoni S, Beukers M, Bouchet JP, Bitton F, Gricourt J, Poncet C, Gautier V, Jiménez-Gómez JM, Rigaill G, Causse M (2018). Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato. Plant J, 96:635-650. PubMed | DOI

Ashoub A, Muller N, Jiménez-Gómez JM, Bruggemann W (2018). Prominent alterations of wild barley leaf transcriptome in response to individual and combined drought acclimation and heat shock conditions. Physiol Plant, 163:18-29. PubMed | DOI

Muller NA, Zhang L, Koornneef M, Jiménez-Gómez JM (2018). Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proc Natl Acad Sci U S A, 115:7135-7140. PubMed | DOI

Olate E, Jiménez-Gómez JM, Holuigue L, Salinas J (2018). NPR1 mediates a novel regulatory pathway in cold acclimation by interacting with HSFA1 factors. Nat Plants, 4:811-823. PubMed | DOI

Danilo B, Perrot L, Botton E, Nogué F, Mazier M (2018). The DFR locus: A smart landing pad for targeted transgene insertion in tomato. PLoS One, 13:e0208395. PubMed | DOI

Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce De Leon I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szovenyi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA (2018). The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. Plant J, 95:168-182. PubMed | DOI

Wiedemann G, Van Gessel N, Kochl F, Hunn L, Schulze K, Maloukh L, Nogué F, Decker EL, Hartung F, Reski R (2018). RecQ Helicases Function in Development, DNA Repair, and Gene Targeting in Physcomitrella patens. Plant Cell, 30:717-736. PubMed | DOI

Derrien B, Clavel M, Baumberger N, Iki T, Sarazin A, Hacquard T, Ponce MR, Ziegler-Graff V, Vaucheret H, Micol JL, Voinnet O, Genschik P (2018). A Suppressor Screen for AGO1 Degradation by the Viral F-Box P0 Protein Uncovers a Role for AGO DUF1785 in sRNA Duplex Unwinding. Plant Cell, 30:1353-1374. PubMed | DOI

Blary A, Gonzalo A, Eber F, Bérard A, Berges H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lode M, Lucas MO, Nesi N, Lloyd A, Chevre AM, Jenczewski E (2018). FANCM Limits Meiotic Crossovers in Brassica Crops. Front Plant Sci, 9:368. PubMed | DOI

Capilla-Pérez L, Solier V, Portemer V, Chambon A, Hurel A, Guillebaux A, Vezon D, Cromer L, Grelon M, Mercier R (2018). The HEM Lines: A New Library of Homozygous Arabidopsis thaliana EMS Mutants and its Potential to Detect Meiotic Phenotypes. Front Plant Sci, 9:1339. PubMed | DOI

Chambon A, West A, Vezon D, Horlow C, De Muyt A, Chelysheva L, Ronceret A, Darbyshire A, Osman K, Heckmann S, Franklin FCH, Grelon M (2018). Identification of ASYNAPTIC4, a Component of the Meiotic Chromosome Axis. Plant Physiol, 178:233-246. PubMed | DOI

Fernandes JB, Duhamel M, Seguela-Arnaud M, Froger N, Girard C, Choinard S, Solier V, De Winne N, De Jaeger G, Gevaert K, Andrey P, Grelon M, Guerois R, Kumar R, Mercier R (2018). FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PLoS Genet, 14:e1007317. PubMed | DOI

Fernandes JB, Seguela-Arnaud M, Larcheveque C, Lloyd AH, Mercier R (2018). Unleashing meiotic crossovers in hybrid plants. Proc Natl Acad Sci U S A, 115:2431-2436. PubMed | DOI

Hurel A, Phillips D, Vrielynck N, Mézard C, Grelon M, Christophorou N (2018). A cytological approach to studying meiotic recombination and chromosome dynamics in Arabidopsis thaliana male meiocytes in three dimensions. Plant J, 95:385-396. PubMed | DOI

Kumar R, Oliver C, Brun C, Juarez-Martinez AB, Tarabay Y, Kadlec J, De Massy B (2018). Mouse REC114 is essential for meiotic DNA double-strand break formation and forms a complex with MEI4. Life Sci Alliance, 1:e201800259. PubMed | DOI

Lloyd A, Blary A, Charif D, Charpentier C, Tran J, Balzergue S, Delannoy E, Rigaill G, Jenczewski E (2018). Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop. New Phytol, 217:367-377. PubMed | DOI

Mieulet D, Aubert G, Bres C, Klein A, Droc G, Vieille E, Rond-Coissieux C, Sanchez M, Dalmais M, Mauxion JP, Rothan C, Guiderdoni E, Mercier R (2018). Unleashing meiotic crossovers in crops. Nat Plants, 4:1010-1016. PubMed | DOI

Serra H, Lambing C, Griffin CH, Topp SD, Nageswaran DC, Underwood CJ, Ziolkowski PA, Seguela-Arnaud M, Fernandes JB, Mercier R, Henderson IR (2018). Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis. Proc Natl Acad Sci U S A, 115:2437-2442. PubMed | DOI

Planchard N, Bertin P, Quadrado M, Dargel-Graffin C, Hatin I, Namy O, Mireau H (2018). The translational landscape of Arabidopsis mitochondria. Nucleic Acids Res, 46:6218-6228. PubMed | DOI

Wang C, Aube F, Quadrado M, Dargel-Graffin C, Mireau H (2018). Three new pentatricopeptide repeat proteins facilitate the splicing of mitochondrial transcripts and complex I biogenesis in Arabidopsis. J Exp Bot, 69:5131-5140. PubMed | DOI

Corem S, Doron-Faigenboim A, Jouffroy O, Maumus F, Arazi T, Bouché N (2018). Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants. Plant Cell, 30:1628-1644. PubMed | DOI

Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR (2018). High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat Commun, 9:541. PubMed | DOI

Tang N, Shahzad Z, Lonjon F, Loudet O, Vailleau F, Maurel C (2018). Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 9:3884. PubMed | DOI

Magnani E, Jiménez-Gómez JM, Soubigou-Taconnat L, Lepiniec L, Fiume E (2017). Profiling the onset of somatic embryogenesis in Arabidopsis. BMC Genomics, 18:998. PubMed | DOI

Serin EaR, Snoek LB, Nijveen H, Willems LaJ, Jiménez-Gómez JM, Hilhorst HWM, Ligterink W (2017). Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 x Shahdara RIL Population. Front Genet, 8:201. PubMed | DOI

Soyk S, Muller NA, Park SJ, Schmalenbach I, Jiang K, Hayama R, Zhang L, Van Eck J, Jiménez-Gómez JM, Lippman ZB (2017). Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nat Genet, 49:162-168. PubMed | DOI

Collonnier C, Epert A, Mara K, Maclot F, Guyon-Debast A, Charlot F, White C, Schaefer DG, Nogué F (2017). CRISPR-Cas9-mediated efficient directed mutagenesis and RAD51-dependent and RAD51-independent gene targeting in the moss Physcomitrella patens. Plant Biotechnol J, 15:122-131. PubMed | DOI

Collonnier C, Guyon-Debast A, Maclot F, Mara K, Charlot F, Nogué F (2017). Towards mastering CRISPR-induced gene knock-in in plants: Survey of key features and focus on the model Physcomitrella patens. Methods, 121-122:103-117. PubMed | DOI

Morineau C, Bellec Y, Tellier F, Gissot L, Kelemen Z, Nogué F, Faure JD (2017). Selective gene dosage by CRISPR-Cas9 genome editing in hexaploid Camelina sativa. Plant Biotechnol J, 15:729-739. PubMed | DOI

Wang C, Aube F, Planchard N, Quadrado M, Dargel-Graffin C, Nogué F, Mireau H (2017). The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3 end of its 5-half intron. Nucleic Acids Res, 45:6119-6134. PubMed | DOI

Butel N, Le Masson I, Bouteiller N, Vaucheret H, Elmayan T (2017). sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J, 90:505-519. PubMed | DOI