Research teams

Epigenetics, Reproduction and Transposable Elements

EPIREP 6 members 36 IJPB publications (2006-to date)

IJPB publications (2006-to date) [36]
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Borges F, Donoghue MTA, LeBlanc C, Wear EE, Tanurdži M, Berube B, Brooks A, Thompson WF, Hanley-Bowdoin L, Martienssen RA (2021). Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31(3):591-600. PubMed | DOI
Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D (2021). Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nat Commun, 12(1):410. PubMed | DOI
Lee CH, Hawker NP, Peters JR, Lonhienne TGA, Gursanscky NR, Matthew L, Brosnan CA, Mann CWG, Cromer L, Taochy C, Ngo QA, Sundaresan V, Schenk PM, Kobe B, Borges F, Mercier R, Bowman JL, Carroll BJ (2021). DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis. PLoS Genet, 17(5):e1009561. PubMed | DOI
Mhiri C, Parisod C, Daniel J, Petit M, Lim KY, Dorlhac De Borne F, Kovarik A, Leitch AR, Grandbastien MA (2019). Parental transposable element loads influence their dynamics in young Nicotiana hybrids and allotetraploids. New Phytol, 221:1619-1633. PubMed | DOI
Galindo-Gonzalez L, Mhiri C, Deyholos MK, Grandbastien MA (2017). LTR-retrotransposons in plants: Engines of evolution. Gene, 626:14-25. PubMed | DOI
Mccarthy EW, Arnold SE, Chittka L, Le Comber SC, Verity R, Dodsworth S, Knapp S, Kelly LJ, Chase MW, Baldwin IT, Kovarik A, Mhiri C, Taylor L, Leitch AR (2015). The effect of polyploidy and hybridization on the evolution of floral colour in Nicotiana (Solanaceae). Ann Bot, 115:1117-1131. PubMed | DOI
Azman A, Mhiri C, Grandbastien M, Tam S (2014). Transposable elements and the detection of somaclonal variation in plant tissue culture: A review. Malaysian Applied Biology, 43:1-12. PubMed | DOI
Parisod C, Salmon A, Ainouche M, Grandbastien MA (2014). Detecting epigenetic effects of transposable elements in plants. Methods Mol Biol, 1112:211-217. PubMed | DOI
Renny-Byfield S, Kovarik A, Kelly LJ, Macas J, Novak P, Chase MW, Nichols RA, Pancholi MR, Grandbastien MA, Leitch AR (2013). Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences. Plant J, 74:829-839. PubMed | DOI
Matyasek R, Renny-Byfield S, Fulnecek J, Macas J, Grandbastien MA, Nichols R, Leitch A, Kovarik A (2012). Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids. BMC Genomics, 13:722. PubMed | DOI
Zerjal T, Rousselet A, Mhiri C, Combes V, Madur D, Grandbastien MA, Charcosset A, Tenaillon MI (2012). Maize genetic diversity and association mapping using transposable element insertion polymorphisms. Theor Appl Genet, 124:1521-1537. PubMed | DOI
Llorens C, Futami R, Covelli L, Dominguez-Escriba L, Viu JM, Tamarit D, Aguilar-Rodriguez J, Vicente-Ripolles M, Fuster G, Bernet GP, Maumus F, Munoz-Pomer A, Sempere JM, Latorre A, Moya A (2011). The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Res, 39:D70-74. PubMed | DOI
Renny-Byfield S, Chester M, Kovarik A, Le Comber SC, Grandbastien MA, Deloger M, Nichols RA, Macas J, Novak P, Chase MW, Leitch AR (2011). Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs. Mol Biol Evol, 28:2843-2854. PubMed | DOI
Parisod C, Alix K, Just J, Petit M, Sarilar V, Mhiri C, Ainouche M, Chalhoub B, Grandbastien MA (2010). Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytol, 186:37-45. PubMed | DOI
Petit M, Guidat C, Daniel J, Denis E, Montoriol E, Bui QT, Lim KY, Kovarik A, Leitch AR, Grandbastien MA, Mhiri C (2010). Mobilization of retrotransposons in synthetic allotetraploid tobacco. New Phytol, 186:135-147. PubMed | DOI
Ainouche ML, Fortune PM, Salmon A, Parisod C, Grandbastien MA, Fukunaga K, Ricou M, Misset MT (2008). Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae). Biological Invasions, 11:1159-1173. PubMed | DOI
Dadejova M, Lim KY, Souckova-Skalicka K, Matyasek R, Grandbastien MA, Leitch A, Kovarik A (2007). Transcription activity of rRNA genes correlates with a tendency towards intergenomic homogenization in Nicotiana allotetraploids. New Phytol, 174:658-668. PubMed | DOI
Le QH, Melayah D, Bonnivard E, Petit M, Grandbastien MA (2007). Distribution dynamics of the Tnt1 retrotransposon in tobacco. Mol Genet Genomics, 278:639-651. PubMed | DOI
Lim KY, Kovarik A, Matyasek R, Chase MW, Clarkson JJ, Grandbastien MA, Leitch AR (2007). Sequence of events leading to near-complete genome turnover in allopolyploid Nicotiana within five million years. New Phytol, 175:756-763. PubMed | DOI
Petit M, Lim KY, Julio E, Poncet C, Dorlhac De Borne F, Kovarik A, Leitch AR, Grandbastien MA, Mhiri C (2007). Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum). Mol Genet Genomics, 278:1-15. PubMed | DOI
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