Genome Biology

Chauvin L, Sevestre F, Lukan T, Nogué F, Gallois JL, Chauvin JE, Veillet F (2021). Gene Editing in Potato Using CRISPR-Cas9 Technology. Methods Mol Biol, 2354:331-351. PubMed | DOI

Devos Y, Mumford JD, Bonsall MB, Camargo AM, Firbank LG, Glandorf DCM, Nogué F, Paraskevopoulos K, Wimmer EA (2021). Potential use of gene drive modified insects against disease vectors, agricultural pests and invasive species poses new challenges for risk assessment. Crit Rev Biotechnol, 1-17. PubMed | DOI

Fujita T, Nogué F, Rensing SA, Takezawa D, Vidali L (2021). Molecular biology of mosses. Plant Mol Biol, 107(4-5):209-211. PubMed | DOI

Genau AC, Li Z, Renzaglia KS, Fernandez Pozo N, Nogué F, Haas FB, Wilhelmsson PKI, Ullrich KK, Schreiber M, Meyberg R, Grosche C, Rensing SA (2021). HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants. Plant Reprod, 34(2):149-173. PubMed | DOI

Guyon-Debast A, Alboresi A, Terret Z, Charlot F, Berthier F, Vendrell-Mir P, Casacuberta JM, Veillet F, Morosinotto T, Gallois JL, Nogué F (2021). A blueprint for gene function analysis through Base Editing in the model plant Physcomitrium (Physcomitrella) patens. New Phytol, 230(3):1258-1272. PubMed | DOI

Pauliši S, Qin W, Arora Verasztó H, Then C, Alary B, Nogué F, Tsiantis M, Hothorn M, Martínez-García JF (2021). Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO J, 40(1):e104273. PubMed | DOI

Vendrell-Mir P, Perroud PF, Haas FB, Meyberg R, Charlot F, Rensing SA, Nogué F, Casacuberta JM (2021). A vertically transmitted amalgavirus is present in certain accessions of the bryophyte Physcomitrium patens. Plant J, 108(6):1786-1797. PubMed | DOI

Borges F, Donoghue MTA, LeBlanc C, Wear EE, Tanurdži M, Berube B, Brooks A, Thompson WF, Hanley-Bowdoin L, Martienssen RA (2021). Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31(3):591-600. PubMed | DOI

Butel N, Yu A, Le Masson I, Borges F, Elmayan T, Taochy C, Gursanscky NR, Cao J, Bi S, Sawyer A, Carroll BJ, Vaucheret H (2021). Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis. Nat Commun, 12(1):2787. PubMed | DOI

Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D (2021). Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nat Commun, 12(1):410. PubMed | DOI

Lee CH, Hawker NP, Peters JR, Lonhienne TGA, Gursanscky NR, Matthew L, Brosnan CA, Mann CWG, Cromer L, Taochy C, Ngo QA, Sundaresan V, Schenk PM, Kobe B, Borges F, Mercier R, Bowman JL, Carroll BJ (2021). DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis. PLoS Genet, 17(5):e1009561. PubMed | DOI

Mejias J, Bazin J, Truong NM, Chen Y, Marteu N, Bouteiller N, Sawa S, Crespi MD, Vaucheret H, Abad P, Favery B, Quentin M (2021). The root-knot nematode effector MiEFF18 interacts with the plant core spliceosomal protein SmD1 required for giant cell formation. New Phytol, 229(6):3408-3423. PubMed | DOI

Capilla-Pérez L, Durand S, Hurel A, Lian Q, Chambon A, Taochy C, Solier V, Grelon M, Mercier R (2021). The synaptonemal complex imposes crossover interference and heterochiasmy in Arabidopsis. Proc Natl Acad Sci U S A, 118(12):e2023613118. PubMed | DOI

Jenczewski E (2021). Moving to and fro between Arabidopsis and its crop relatives confirms the role of chromosome remodelling on meiotic recombination. J Exp Bot, 72(8):2811-2813. PubMed | DOI

Sourdille P, Jenczewski E (2021). Homoeologous exchanges in allopolyploids: how Brassica napus established self-control!. New Phytol, 229(6):3041-3043. PubMed | DOI

Vrielynck N, Schneider K, Rodriguez M, Sims J, Chambon A, Hurel A, De Muyt A, Ronceret A, Krsicka O, Mézard C, Schlögelhofer P, Grelon M (2021). Conservation and divergence of meiotic DNA double strand break forming mechanisms in Arabidopsis thaliana. Nucleic Acids Res, 49(17):9821-9835. PubMed | DOI

Durand S, Ricou A, Simon M, Dehaene N, Budar F, Camilleri C (2021). A restorer-of-fertility-like pentatricopeptide repeat protein promotes cytoplasmic male sterility in Arabidopsis thaliana. Plant J, 105(1):124-135. PubMed | DOI

Nguyen TT, Planchard N, Dahan J, Arnal N, Balzergue S, Benamar A, Bertin P, Brunaud V, Dargel-Graffin C, Macherel D, Martin-Magniette ML, Quadrado M, Namy O, Mireau H (2021). A case of gene fragmentation in plant mitochondria fixed by the selection of a compensatory restorer of fertility-like PPR gene. Mol Biol Evol, msab115. PubMed | DOI

Wang C, Lezhneva L, Arnal N, Quadrado M, Mireau H (2021). The radish Ogura fertility restorer impedes translation elongation along its cognate CMS-causing mRNA. Proc Natl Acad Sci U S A, 118(35):e2105274118. PubMed | DOI

Baduel P, Leduque B, Ignace A, Gy I, Gil J Jr, Loudet O, Colot V, Quadrana L (2021). Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana. Genome Biol, 22(1):138. PubMed | DOI

Jiao WB, Patel V, Klasen J, Liu F, Pecinkova P, Ferrand M, Gy I, Camilleri C, Effgen S, Koornneef M, Pecinka A, Loudet O, Schneeberger K (2021). The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana. Mol Biol Evol, 38(4):1225-1240. PubMed | DOI

Devos Y, Bonsall MB, Firbank LG, Mumford J, Nogué F, Wimmer EA (2020). Gene Drive-Modified Organisms: Developing Practical Risk Assessment Guidance. Trends Biotechnol, S0167-7799(20)30310-3. PubMed | DOI

Trogu S, Ermert AL, Stahl F, Nogué F, Gans T, Hughes J (2020). Multiplex CRISPR-Cas9 mutagenesis of the phytochrome gene family in Physcomitrium (Physcomitrella) patens. Plant Mol Biol. PubMed | DOI

Veillet F, Kermarrec MP, Chauvin L, Chauvin JE, Nogué F (2020). CRISPR-induced indels and base editing using the Staphylococcus aureus Cas9 in potato. PLoS One, 15(8):e0235942. PubMed | DOI

Veillet F, Perrot L, Guyon-Debast A, Kermarrec MP, Chauvin L, Chauvin JE, Gallois JL, Mazier M, Nogué F (2020). Expanding the CRISPR Toolbox in P. patens Using SpCas9-NG Variant and Application for Gene and Base Editing in Solanaceae Crops. Int J Mol Sci, 21:. PubMed | DOI

Vendrell-Mir P, Lopez-Obando M, Nogué F, Casacuberta JM (2020). Different Families of Retrotransposons and DNA Transposons Are Actively Transcribed and May Have Transposed Recently in Physcomitrium (Physcomitrella) patens. Front Plant Sci, 11:1274. PubMed | DOI

Cao J, Gursanscky NR, Fletcher SJ, Sawyer A, Wadia M, Mckeough L, Coleman M, Dressel U, Taochy C, Mitter N, Vaucheret H, Carroll BJ (2020). Can-Seq: a PCR and DNA sequencing strategy for identifying new alleles of known and candidate genes. Plant Methods, 16:16. PubMed | DOI

Christophorou N, She W, Long J, Hurel A, Beaubiat S, Idir Y, Tagliaro-Jahns M, Chambon A, Solier V, Vezon D, Grelon M, Feng X, Bouché N, Mézard C (2020). AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization. PLoS Genet, 16:e1008894. PubMed | DOI

Pfalz M, Gonzalo A, Christophorou N, Blary A, Bérard A, Bessoltane N, Montes E, Jaffrelo L, Poncet C, Le Paslier MC, Nesi N, Charif D, Jenczewski E (2020). Identifying and Isolating Meiotic Mutants in a Polyploid Brassica Crop. Methods Mol Biol, 2061:303-318. PubMed | DOI

Tepfer M, Hurel A, Tellier F, Jenczewski E (2020). Evaluation of the progeny produced by interspecific hybridization between Camelina sativa and C. microcarpa. Ann Bot, 125:993-1002. PubMed | DOI

Yang C, Sofroni K, Wijnker E, Hamamura Y, Carstens L, Harashima H, Stolze SC, Vezon D, Chelysheva L, Orban-Nemeth Z, Pochon G, Nakagami H, Schlögelhofer P, Grelon M, Schnittger A (2020). The Arabidopsis Cdk1/Cdk2 homolog CDKA;1 controls chromosome axis assembly during plant meiosis. EMBO J, 39:e101625. PubMed | DOI

Chardon F, Cueff G, Delannoy E, Aube F, Lornac A, Bedu M, Gilard F, Pateyron S, Rogniaux H, Gargaros A, Mireau H, Rajjou L, Martin-Magniette ML, Budar F (2020). The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis. Plants, 9:. PubMed | DOI

Small ID, Schallenberg-Rudinger M, Takenaka M, Mireau H, Ostersetzer-Biran O (2020). Plant organellar RNA editing: what 30 years of research has revealed. Plant J, 101:1040-1056. PubMed | DOI

Wang C, Fourdin R, Quadrado M, Dargel-Graffin C, Tolleter D, Macherel D, Mireau H (2020). Rerouting of ribosomal proteins into splicing in plant organelles. Proc Natl Acad Sci U S A, 117(47):29979-29987. PubMed | DOI

Hanemian M, Vasseur F, Marchadier E, Gilbault E, Bresson J, Gy I, Violle C, Loudet O (2020). Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nat Commun, 11(1):4140. PubMed | DOI

Téoulé E, Géry C (2020). Mapping of Quantitative Trait Loci (QTL) Associated with Plant Freezing Tolerance and Cold Acclimation. Methods Mol Biol, 2156:61-84. PubMed | DOI

Van Dooren TJM, Silveira AB, Gilbault E, Jiménez-Gómez JM, Martin A, Bach L, Tisne S, Quadrana L, Loudet O, Colot V (2020). Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects. J Exp Bot, 71:3588-3602. PubMed | DOI

Bastet A, Zafirov D, Giovinazzo N, Guyon-Debast A, Nogué F, Robaglia C, Gallois JL (2019). Mimicking natural polymorphism in eIF4E by CRISPR-Cas9 base editing is associated with resistance to potyviruses. Plant Biotechnol J, 17:1736-1750. PubMed | DOI

Danilo B, Perrot L, Mara K, Botton E, Nogué F, Mazier M (2019). Efficient and transgene-free gene targeting using Agrobacterium-mediated delivery of the CRISPR/Cas9 system in tomato. Plant Cell Rep, 38:459-462. PubMed | DOI

Ermert AL, Nogué F, Stahl F, Gans T, Hughes J (2019). CRISPR/Cas9-Mediated Knockout of Physcomitrella patens Phytochromes. Methods Mol Biol, 2026:237-263. PubMed | DOI

Guyon-Debast A, Rossetti P, Charlot F, Epert A, Neuhaus JM, Schaefer DG, Nogué F (2019). The XPF-ERCC1 Complex Is Essential for Genome Stability and Is Involved in the Mechanism of Gene Targeting in Physcomitrella patens. Front Plant Sci, 10:588. PubMed | DOI

Guzman-Zapata D, Sandoval-Vargas JM, Macedo-Osorio KS, Salgado-Manjarrez E, Castrejon-Flores JL, Oliver-Salvador MDC, Duran-Figueroa NV, Nogué F, Badillo-Corona JA (2019). Efficient Editing of the Nuclear APT Reporter Gene in Chlamydomonas reinhardtii via Expression of a CRISPR-Cas9 Module. Int J Mol Sci, 20:1247. PubMed | DOI

Mara K, Charlot F, Guyon-Debast A, Schaefer DG, Collonnier C, Grelon M, Nogué F (2019). POLQ plays a key role in the repair of CRISPR/Cas9-induced double-stranded breaks in the moss Physcomitrella patens. New Phytol, 222:1380-1391. PubMed | DOI

Nogué F, Vergne P, Chevre AM, Chauvin JE, Bouchabké-Coussa O, Déjardin A, Chevreau E, Hibrand-Saint Oyant L, Mazier M, Barret P, Guiderdoni E, Sallaud C, Foucrier S, Devaux P, Rogowsky PM (2019). Crop plants with improved culture and quality traits for food, feed and other uses. Transgenic Res, 28:65-73. PubMed | DOI

Sakai K, Charlot F, Le Saux T, Bonhomme S, Nogué F, Palauqui JC, Fattaccioli J (2019). Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology. Plant Methods, 15:79. PubMed | DOI

Veillet F, Perrot L, Chauvin L, Kermarrec MP, Guyon-Debast A, Chauvin JE, Nogué F, Mazier M (2019). Transgene-Free Genome Editing in Tomato and Potato Plants Using Agrobacterium-Mediated Delivery of a CRISPR/Cas9 Cytidine Base Editor. Int J Mol Sci, 20:402. PubMed | DOI

Chen Q, Soulay F, Saudemont B, Elmayan T, Marmagne A, Masclaux-Daubresse CL (2019). Overexpression of ATG8 in Arabidopsis Stimulates Autophagic Activity and Increases Nitrogen Remobilization Efficiency and Grain Filling. Plant Cell Physiol, 60:343-352. PubMed | DOI

Du F, Gong W, Boscá S, Tucker M, Vaucheret H, Laux T (2019). Dose-Dependent AGO1-Mediated Inhibition of the miRNA165/166 Pathway Modulates Stem Cell Maintenance in Arabidopsis Shoot Apical Meristem. Plant Commun, 1(1):100002. PubMed | DOI

Lange H, Ndecky SYA, Gomez-Diaz C, Pflieger D, Butel N, Zumsteg J, Kuhn L, Piermaria C, Chicher J, Christie M, Karaaslan ES, Lang PLM, Weigel D, Vaucheret H, Hammann P, Gagliardi D (2019). RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. Nat Commun, 10:3871. PubMed | DOI

Michaeli S, Clavel M, Lechner E, Viotti C, Wu J, Dubois M, Hacquard T, Derrien B, Izquierdo E, Lecorbeiller M, Bouteiller N, De Cilia J, Ziegler-Graff V, Vaucheret H, Galili G, Genschik P (2019). The viral F-box protein P0 induces an ER-derived autophagy degradation pathway for the clearance of membrane-bound AGO1. Proc Natl Acad Sci U S A, 116:22872-22883. PubMed | DOI