Genome Biology : publication

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, De Ridder D, Kammenga JE, Snoek BL (2017). AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana. Plant J, 89:1225-1235. PubMed | DOI

Lopez-Obando M, Hoffmann B, Géry C, Guyon-Debast A, Téoulé E, Rameau C, Bonhomme S, Nogué F (2016). Simple and Efficient Targeting of Multiple Genes Through CRISPR-Cas9 in Physcomitrella patens. G3, 6:3647-3653. PubMed | DOI

Nogué F, Mara K, Collonnier C, Casacuberta JM (2016). Genome engineering and plant breeding: impact on trait discovery and development. Plant Cell Rep, 35:1475-1486. PubMed | DOI

Vives C, Charlot F, Mhiri C, Contreras B, Daniel J, Epert A, Voytas DF, Grandbastien MA, Nogué F, Casacuberta JM (2016). Highly efficient gene tagging in the bryophyte Physcomitrella patens using the tobacco (Nicotiana tabacum) Tnt1 retrotransposon. New Phytol, 212:759-769. PubMed | DOI

Von Schwartzenberg K, Lindner AC, Gruhn N, Simura J, Novák O, Strnad M, Gonneau M, Nogué F, Heyl A (2016). CHASE domain-containing receptors play an essential role in the cytokinin response of the moss Physcomitrella patens. J Exp Bot, 67:667-679. PubMed | DOI

Elvira-Matelot E, Bardou F, Ariel F, Jauvion V, Bouteiller N, Le Masson I, Cao J, Crespi MD, Vaucheret H (2016). The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis. Plant Cell, 28:426-438. PubMed | DOI

Elvira-Matelot E, Hachet M, Shamandi N, Comella P, Saez-Vasquez J, Zytnicki M, Vaucheret H (2016). Arabidopsis RNASE THREE LIKE2 Modulates the Expression of Protein-Coding Genes via 24-Nucleotide Small Interfering RNA-Directed DNA Methylation. Plant Cell, 28:406-425. PubMed | DOI

Hématy K, Bellec Y, Podicheti R, Bouteiller N, Anne P, Morineau C, Haslam RP, Beaudoin F, Napier JA, Mockaitis K, Gagliardi D, Vaucheret H, Lange H, Faure JD (2016). The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLoS Genet, 12:e1005817. PubMed | DOI

Porter JR, Durand JL, Elmayan T (2016). Gene editing: Edited plants should not be patented. Nature, 530:33. PubMed | DOI

Choi K, Reinhard C, Serra H, Ziolkowski PA, Underwood CJ, Zhao X, Hardcastle TJ, Yelina NE, Griffin C, Jackson M, Mézard C, Mcvean G, Copenhaver GP, Henderson IR (2016). Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. PLoS Genet, 12:e1006179. PubMed | DOI

Cifuentes M, Jolivet S, Cromer L, Harashima H, Bulankova P, Renne C, Crismani W, Nomura Y, Nakagami H, Sugimoto K, Schnittger A, Riha K, Mercier R (2016). TDM1 Regulation Determines the Number of Meiotic Divisions. PLoS Genet, 12:e1005856. PubMed | DOI

Grelon M (2016). Meiotic recombination mechanisms. C R Biol, 339:247-251. PubMed | DOI

Haili N, Planchard N, Arnal N, Quadrado M, Vrielynck N, Dahan J, Des Francs-Small CC, Mireau H (2016). The MTL1 Pentatricopeptide Repeat Protein Is Required for Both Translation and Splicing of the Mitochondrial NADH DEHYDROGENASE SUBUNIT7 mRNA in Arabidopsis. Plant Physiol, 170:354-366. PubMed | DOI

Lloyd A, Bomblies K (2016). Meiosis in autopolyploid and allopolyploid Arabidopsis. Curr Opin Plant Biol, 30:116-122. PubMed | DOI

Mieulet D, Jolivet S, Rivard M, Cromer L, Vernet A, Mayonove P, Pereira L, Droc G, Courtois B, Guiderdoni E, Mercier R (2016). Turning rice meiosis into mitosis. Cell Res, 26:1242-1254. PubMed | DOI

Prieu C, Matamoro-Vidal A, Raquin C, Dobritsa A, Mercier R, Gouyon PH, Albert B (2016). Aperture number influences pollen survival in Arabidopsis mutants. Am J Bot, 103:452-459. PubMed | DOI

Robert T, Vrielynck N, Mézard C, De Massy B, Grelon M (2016). A new light on the meiotic DSB catalytic complex. Semin Cell Dev Biol, 54:165-176. PubMed | DOI

Vrielynck N, Chambon A, Vezon D, Pereira L, Chelysheva L, De Muyt A, Mézard C, Mayer C, Grelon M (2016). A DNA topoisomerase VI-like complex initiates meiotic recombination. Science, 351:939-943. PubMed | DOI

Gaborieau L, Brown GG, Mireau H (2016). The Propensity of Pentatricopeptide Repeat Genes to Evolve into Restorers of Cytoplasmic Male Sterility. Front Plant Sci, 7:1816. PubMed | DOI

Roux F, Mary-Huard T, Barillot E, Wenes E, Botran L, Durand S, Villoutreix R, Martin-Magniette ML, Camilleri C, Budar F (2016). Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field. Proc Natl Acad Sci U S A, 113:3687-3692. PubMed | DOI

Simon M, Durand S, Pluta N, Gobron N, Botran L, Ricou A, Camilleri C, Budar F (2016). Genomic Conflicts that Cause Pollen Mortality and Raise Reproductive Barriers in Arabidopsis thaliana. Genetics, 203:1353-1367. PubMed | DOI

Galindo-Gonzalez L, Mhiri C, Grandbastien MA, Deyholos MK (2016). Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions. BMC Genomics, 17:1002. PubMed | DOI

Bar M, Israeli A, Levy M, Ben Gera H, Jiménez-Gómez JM, Kouril S, Tarkowski P, Ori N (2016). CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling. Plant Cell, 28:1602-1615. PubMed | DOI

Mosquera T, Alvarez MF, Jiménez-Gómez JM, Muktar MS, Paulo MJ, Steinemann S, Li J, Draffehn A, Hofmann A, Lubeck J, Strahwald J, Tacke E, Hofferbert HR, Walkemeier B, Gebhardt C (2016). Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease. PLoS One, 11:e0156254. PubMed | DOI

Muller NA, Jiménez-Gómez JM (2016). Analysis of Circadian Leaf Movements. Methods Mol Biol, 1398:71-79. PubMed | DOI

Muller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM (2016). Domestication selected for deceleration of the circadian clock in cultivated tomato. Nat Genet, 48:89-93. PubMed | DOI

Perea-Resa C, Carrasco-Lopez C, Catala R, Tureckova V, Novák O, Zhang W, Sieburth L, Jiménez-Gómez JM, Salinas J (2016). The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping. Plant Cell, 28:505-520. PubMed | DOI

Shahzad Z, Canut M, Tournaire-Roux C, Martiniere A, Boursiac Y, Loudet O, Maurel C (2016). A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics. Cell, 167:87-98 e14. PubMed | DOI

Srinivasan A, Jiménez-Gómez JM, Fornara F, Soppe WJ, Brambilla V (2016). Alternative splicing enhances transcriptome complexity in desiccating seeds. J Integr Plant Biol, 58:947-958. PubMed | DOI

Viaud G, Loudet O, Cournede PH (2016). Leaf Segmentation and Tracking in Arabidopsis thaliana Combined to an Organ-Scale Plant Model for Genotypic Differentiation. Front Plant Sci, 7:2057. PubMed | DOI

Casacuberta JM, Devos Y, Du Jardin P, Ramon M, Vaucheret H, Nogué F (2015). Biotechnological uses of RNAi in plants: risk assessment considerations. Trends Biotechnol, 33:145-147. PubMed | DOI

Martinez De Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A (2015). In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs. Nucleic Acids Res, 43:2902-2913. PubMed | DOI

Parent JS, Bouteiller N, Elmayan T, Vaucheret H (2015). Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant J, 81:223-232. PubMed | DOI

Parent JS, Jauvion V, Bouché N, Beclin C, Hachet M, Zytnicki M, Vaucheret H (2015). Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes. Nucleic Acids Res, 43:8464-8475. PubMed | DOI

Shamandi N, Zytnicki M, Charbonnel C, Elvira-Matelot E, Bochnakian A, Comella P, Mallory AC, Lepere G, Saez-Vasquez J, Vaucheret H (2015). Plants Encode a General siRNA Suppressor That Is Induced and Suppressed by Viruses. PLoS Biol, 13:e1002326. PubMed | DOI

Vaucheret H (2015). Gene silencing: Mode of miRNA biogenesis matters. Nat Plants, 1:15019. PubMed | DOI

Yu A, Saudemont B, Bouteiller N, Elvira-Matelot E, Lepere G, Parent JS, Morel JB, Cao J, Elmayan T, Vaucheret H (2015). Second-Site Mutagenesis of a Hypomorphic argonaute1 Allele Identifies SUPERKILLER3 as an Endogenous Suppressor of Transgene Posttranscriptional Gene Silencing. Plant Physiol, 169:1266-1274. PubMed | DOI

Boucher D, Vu T, Bain AL, Tagliaro-Jahns M, Shi W, Lane SW, Khanna KK (2015). Ssb2/Nabp1 is dispensable for thymic maturation, male fertility, and DNA repair in mice. FASEB J, 29:3326-3334. PubMed | DOI

Girard C, Chelysheva L, Choinard S, Froger N, Macaisne N, Lemhemdi A, Mazel J, Crismani W, Mercier R (2015). AAA-ATPase FIDGETIN-LIKE 1 and Helicase FANCM Antagonize Meiotic Crossovers by Distinct Mechanisms. PLoS Genet, 11:e1005369. PubMed | DOI

Mézard C, Jahns MT, Grelon M (2015). Where to cross? New insights into the location of meiotic crossovers. Trends Genet, 31:393-401. PubMed | DOI

Portemer V, Renne C, Guillebaux A, Mercier R (2015). Large genetic screens for gynogenesis and androgenesis haploid inducers in Arabidopsis thaliana failed to identify mutants. Front Plant Sci, 6:147. PubMed | DOI

Seguela-Arnaud M, Crismani W, Larcheveque C, Mazel J, Froger N, Choinard S, Lemhemdi A, Macaisne N, Van Leene J, Gevaert K, De Jaeger G, Chelysheva L, Mercier R (2015). Multiple mechanisms limit meiotic crossovers: TOP3alpha and two BLM homologs antagonize crossovers in parallel to FANCM. Proc Natl Acad Sci U S A, 112:4713-4718. PubMed | DOI

Séchet J, Roux C, Plessis A, Effroy D, Frey A, Perreau F, Biniek C, Krieger-Liszkay A, Macherel D, North HM, Mireau H, Marion-Poll A (2015). The ABA-deficiency suppressor locus HAS2 encodes the PPR protein LOI1/MEF11 involved in mitochondrial RNA editing. Mol Plant, 8:644-656. PubMed | DOI

Grandbastien MA (2015). LTR retrotransposons, handy hitchhikers of plant regulation and stress response. Biochim Biophys Acta, 1849:403-416. PubMed | DOI

Mccarthy EW, Arnold SE, Chittka L, Le Comber SC, Verity R, Dodsworth S, Knapp S, Kelly LJ, Chase MW, Baldwin IT, Kovarik A, Mhiri C, Taylor L, Leitch AR (2015). The effect of polyploidy and hybridization on the evolution of floral colour in Nicotiana (Solanaceae). Ann Bot, 115:1117-1131. PubMed | DOI

Bensussan M, Lefebvre V, Ducamp A, Trouverie J, Gineau E, Fortabat MN, Guillebaux A, Baldy A, Naquin D, Herbette S, Lapierre C, Mouille G, Horlow C, Durand-Tardif M (2015). Suppression of Dwarf and irregular xylem Phenotypes Generates Low-Acetylated Biomass Lines in Arabidopsis. Plant Physiol, 168:452-463. PubMed | DOI

Le Hir R, Spinner L, Klemens PA, Chakraborti D, De Marco F, Vilaine F, Wolff N, Lemoine R, Porcheron B, Géry C, Téoulé E, Chabout S, Mouille G, Neuhaus HE, Dinant S, Bellini C (2015). Disruption of the Sugar Transporters AtSWEET11 and AtSWEET12 Affects Vascular Development and Freezing Tolerance in Arabidopsis. Mol Plant, 8:1687-1690. PubMed | DOI

Charlot F, Chelysheva L, Kamisugi Y, Vrielynck N, Guyon A, Epert A, Le Guin S, Schaefer DG, Cuming AC, Grelon M, Nogué F (2014). RAD51B plays an essential role during somatic and meiotic recombination in Physcomitrella. Nucleic Acids Res, 42:11965-11978. PubMed | DOI

Maumus F, Epert A, Nogué F, Blanc G (2014). Plant genomes enclose footprints of past infections by giant virus relatives. Nat Commun, 5:4268. PubMed | DOI

Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Berard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D (2014). The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. PLoS Genet, 10:e1004564. PubMed | DOI

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Genome Biology

GENOMES 6 research teams