Genome Biology

Taochy C, Yu A, Bouché N, Bouteiller N, Elmayan T, Dressel U, Carroll BJ, Vaucheret H (2019). Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis. Nucleic Acids Res, 47:9104-9114. PubMed | DOI

Barrada A, Djendli M, Desnos T, Mercier R, Robaglia C, Montane MH, Menand B (2019). A TOR-YAK1 signaling axis controls cell cycle, meristem activity and plant growth in Arabidopsis. Development, 146:dev171298. PubMed | DOI

Blary A, Jenczewski E (2019). Manipulation of crossover frequency and distribution for plant breeding. Theor Appl Genet, 132:575-592. PubMed | DOI

Cromer L, Jolivet S, Singh DK, Berthier F, De Winne N, De Jaeger G, Komaki S, Prusicki MA, Schnittger A, Guerois R, Mercier R (2019). Patronus is the elusive plant securin, preventing chromosome separation by antagonizing separase. Proc Natl Acad Sci U S A, 116:16018-16027. PubMed | DOI

Forzani C, Duarte GT, Van Leene J, Clément G, Huguet S, Paysant-Le Roux C, Mercier R, De Jaeger G, Leprince AS, Meyer C (2019). Mutations of the AtYAK1 Kinase Suppress TOR Deficiency in Arabidopsis. Cell Rep, 27:3696-3708 e3695. PubMed | DOI

Gonzalo A, Lucas MO, Charpentier C, Sandmann G, Lloyd A, Jenczewski E (2019). Reducing MSH4 copy number prevents meiotic crossovers between non-homologous chromosomes in Brassica napus. Nat Commun, 10:2354. PubMed | DOI

Khanday I, Skinner D, Yang B, Mercier R, Sundaresan V (2019). A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds. Nature, 565:91-95. PubMed | DOI

Kumar R, Duhamel M, Coutant E, Ben-Nahia E, Mercier R (2019). Antagonism between BRCA2 and FIGL1 regulates homologous recombination. Nucleic Acids Res, 47:5170-5180. PubMed | DOI

Lloyd A, Jenczewski E (2019). Modelling Sex-Specific Crossover Patterning in Arabidopsis. Genetics, 211:847-859. PubMed | DOI

Martinez Palacios P, Jacquemot MP, Tapie M, Rousselet A, Diop M, Remoue C, Falque M, Lloyd A, Jenczewski E, Lassalle G, Chevre AM, Lelandais C, Crespi M, Brabant P, Joets J, Alix K (2019). Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids. Mol Biol Evol, 36:709-726. PubMed | DOI

Wang C, Liu Q, Shen Y, Hua Y, Wang J, Lin J, Wu M, Sun T, Cheng Z, Mercier R, Wang K (2019). Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes. Nat Biotechnol, 37:283-286. PubMed | DOI

Boussardon C, Martin-Magniette ML, Godin B, Benamar A, Vittrant B, Citerne S, Mary-Huard T, Macherel D, Rajjou L, Budar F (2019). Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor. Front Plant Sci, 10:32. PubMed | DOI

Waltz F, Nguyen TT, Arrive M, Bochler A, Chicher J, Hammann P, Kuhn L, Quadrado M, Mireau H, Hashem Y, Giege P (2019). Small is big in Arabidopsis mitochondrial ribosome. Nat Plants, 5:106-117. PubMed | DOI

Mhiri C, Parisod C, Daniel J, Petit M, Lim KY, Dorlhac De Borne F, Kovarik A, Leitch AR, Grandbastien MA (2019). Parental transposable element loads influence their dynamics in young Nicotiana hybrids and allotetraploids. New Phytol, 221:1619-1633. PubMed | DOI

Deremetz A, Le Roux C, Idir Y, Brousse C, Agorio A, Gy I, Parker JE, Bouché N (2019). Antagonistic Actions of FPA and IBM2 Regulate Transcript Processing from Genes Containing Heterochromatin. Plant Physiol, 180:392-403. PubMed | DOI

Marchadier E, Hanemian M, Tisne S, Bach L, Bazakos C, Gilbault E, Haddadi P, Virlouvet L, Loudet O (2019). The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana. PLoS Genet, 15:e1007954. PubMed | DOI

Danilo B, Perrot L, Botton E, Nogué F, Mazier M (2018). The DFR locus: A smart landing pad for targeted transgene insertion in tomato. PLoS One, 13:e0208395. PubMed | DOI

Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce De Leon I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szovenyi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA (2018). The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. Plant J, 95:168-182. PubMed | DOI

Wiedemann G, Van Gessel N, Kochl F, Hunn L, Schulze K, Maloukh L, Nogué F, Decker EL, Hartung F, Reski R (2018). RecQ Helicases Function in Development, DNA Repair, and Gene Targeting in Physcomitrella patens. Plant Cell, 30:717-736. PubMed | DOI

Derrien B, Clavel M, Baumberger N, Iki T, Sarazin A, Hacquard T, Ponce MR, Ziegler-Graff V, Vaucheret H, Micol JL, Voinnet O, Genschik P (2018). A Suppressor Screen for AGO1 Degradation by the Viral F-Box P0 Protein Uncovers a Role for AGO DUF1785 in sRNA Duplex Unwinding. Plant Cell, 30:1353-1374. PubMed | DOI

Blary A, Gonzalo A, Eber F, Bérard A, Berges H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lode M, Lucas MO, Nesi N, Lloyd A, Chevre AM, Jenczewski E (2018). FANCM Limits Meiotic Crossovers in Brassica Crops. Front Plant Sci, 9:368. PubMed | DOI

Capilla-Pérez L, Solier V, Portemer V, Chambon A, Hurel A, Guillebaux A, Vezon D, Cromer L, Grelon M, Mercier R (2018). The HEM Lines: A New Library of Homozygous Arabidopsis thaliana EMS Mutants and its Potential to Detect Meiotic Phenotypes. Front Plant Sci, 9:1339. PubMed | DOI

Chambon A, West A, Vezon D, Horlow C, De Muyt A, Chelysheva L, Ronceret A, Darbyshire A, Osman K, Heckmann S, Franklin FCH, Grelon M (2018). Identification of ASYNAPTIC4, a Component of the Meiotic Chromosome Axis. Plant Physiol, 178:233-246. PubMed | DOI

Fernandes JB, Duhamel M, Seguela-Arnaud M, Froger N, Girard C, Choinard S, Solier V, De Winne N, De Jaeger G, Gevaert K, Andrey P, Grelon M, Guerois R, Kumar R, Mercier R (2018). FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PLoS Genet, 14:e1007317. PubMed | DOI

Fernandes JB, Seguela-Arnaud M, Larcheveque C, Lloyd AH, Mercier R (2018). Unleashing meiotic crossovers in hybrid plants. Proc Natl Acad Sci U S A, 115:2431-2436. PubMed | DOI

Hurel A, Phillips D, Vrielynck N, Mézard C, Grelon M, Christophorou N (2018). A cytological approach to studying meiotic recombination and chromosome dynamics in Arabidopsis thaliana male meiocytes in three dimensions. Plant J, 95:385-396. PubMed | DOI

Kumar R, Oliver C, Brun C, Juarez-Martinez AB, Tarabay Y, Kadlec J, De Massy B (2018). Mouse REC114 is essential for meiotic DNA double-strand break formation and forms a complex with MEI4. Life Sci Alliance, 1:e201800259. PubMed | DOI

Lloyd A, Blary A, Charif D, Charpentier C, Tran J, Balzergue S, Delannoy E, Rigaill G, Jenczewski E (2018). Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop. New Phytol, 217:367-377. PubMed | DOI

Mieulet D, Aubert G, Bres C, Klein A, Droc G, Vieille E, Rond-Coissieux C, Sanchez M, Dalmais M, Mauxion JP, Rothan C, Guiderdoni E, Mercier R (2018). Unleashing meiotic crossovers in crops. Nat Plants, 4:1010-1016. PubMed | DOI

Serra H, Lambing C, Griffin CH, Topp SD, Nageswaran DC, Underwood CJ, Ziolkowski PA, Seguela-Arnaud M, Fernandes JB, Mercier R, Henderson IR (2018). Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis. Proc Natl Acad Sci U S A, 115:2437-2442. PubMed | DOI

Planchard N, Bertin P, Quadrado M, Dargel-Graffin C, Hatin I, Namy O, Mireau H (2018). The translational landscape of Arabidopsis mitochondria. Nucleic Acids Res, 46:6218-6228. PubMed | DOI

Wang C, Aube F, Quadrado M, Dargel-Graffin C, Mireau H (2018). Three new pentatricopeptide repeat proteins facilitate the splicing of mitochondrial transcripts and complex I biogenesis in Arabidopsis. J Exp Bot, 69:5131-5140. PubMed | DOI

Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR (2018). High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat Commun, 9:541. PubMed | DOI

Tang N, Shahzad Z, Lonjon F, Loudet O, Vailleau F, Maurel C (2018). Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 9:3884. PubMed | DOI

Collonnier C, Epert A, Mara K, Maclot F, Guyon-Debast A, Charlot F, White C, Schaefer DG, Nogué F (2017). CRISPR-Cas9-mediated efficient directed mutagenesis and RAD51-dependent and RAD51-independent gene targeting in the moss Physcomitrella patens. Plant Biotechnol J, 15:122-131. PubMed | DOI

Collonnier C, Guyon-Debast A, Maclot F, Mara K, Charlot F, Nogué F (2017). Towards mastering CRISPR-induced gene knock-in in plants: Survey of key features and focus on the model Physcomitrella patens. Methods, 121-122:103-117. PubMed | DOI

Morineau C, Bellec Y, Tellier F, Gissot L, Kelemen Z, Nogué F, Faure JD (2017). Selective gene dosage by CRISPR-Cas9 genome editing in hexaploid Camelina sativa. Plant Biotechnol J, 15:729-739. PubMed | DOI

Wang C, Aube F, Planchard N, Quadrado M, Dargel-Graffin C, Nogué F, Mireau H (2017). The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3 end of its 5-half intron. Nucleic Acids Res, 45:6119-6134. PubMed | DOI

Butel N, Le Masson I, Bouteiller N, Vaucheret H, Elmayan T (2017). sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J, 90:505-519. PubMed | DOI

Charbonnel C, Niazi AK, Elvira-Matelot E, Nowak E, Zytnicki M, De Bures A, Jobet E, Opsomer A, Shamandi N, Nowotny M, Carapito C, Reichheld JP, Vaucheret H, Saez-Vasquez J (2017). The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain. Nucleic Acids Res, 45:11891-11907. PubMed | DOI

Taochy C, Gursanscky NR, Cao J, Fletcher SJ, Dressel U, Mitter N, Tucker MR, Koltunow AMG, Bowman JL, Vaucheret H, Carroll BJ (2017). A Genetic Screen for Impaired Systemic RNAi Highlights the Crucial Role of DICER-LIKE 2. Plant Physiol, 175:1424-1437. PubMed | DOI

Wu YY, Hou BH, Lee WC, Lu SH, Yang CJ, Vaucheret H, Chen HM (2017). DCL2- and RDR6-dependent transitive silencing of SMXL4 and SMXL5 in Arabidopsis dcl4 mutants causes defective phloem transport and carbohydrate over-accumulation. Plant J, 90:1064-1078. PubMed | DOI

Adamczyk-Chauvat K, Delaunay S, Vannier A, Francois C, Thomas G, Eber F, Lode M, Gilet M, Huteau V, Morice J, Negre S, Falentin C, Coriton O, Darmency H, Alrustom B, Jenczewski E, Rousseau-Gueutin M, Chevre AM (2017). Gene Introgression in Weeds Depends on Initial Gene Location in the Crop: Brassica napus-Raphanus raphanistrum Model. Genetics, 206:1361-1372. PubMed | DOI

Robert T, De Massy B, Grelon M (2017). [TopoVIL : a molecular scissor essential for reproduction]. Med Sci (Paris), 33:512-518. PubMed | DOI

Seguela-Arnaud M, Choinard S, Larcheveque C, Girard C, Froger N, Crismani W, Mercier R (2017). RMI1 and TOP3alpha limit meiotic CO formation through their C-terminal domains. Nucleic Acids Res, 45:1860-1871. PubMed | DOI

Rizzolatti C, Bury P, Tatara E, Pin PA, Rodde N, Berges H, Budar F, Mireau H, Gielen JJL (2017). Map-based cloning of the fertility restoration locus Rfm1 in cultivated barley (Hordeum vulgare). Euphytica, 213:276. PubMed | DOI

Galindo-Gonzalez L, Mhiri C, Deyholos MK, Grandbastien MA (2017). LTR-retrotransposons in plants: Engines of evolution. Gene, 626:14-25. PubMed | DOI

Perumal S, Waminal NE, Lee J, Choi BS, Kim HH, Grandbastien MA, Yang TJ (2017). Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution. Sci Rep, 7:17986. PubMed | DOI

Agorio A, Durand S, Fiume E, Brousse C, Gy I, Simon M, Anava S, Rechavi O, Loudet O, Camilleri C, Bouché N (2017). An Arabidopsis Natural Epiallele Maintained by a Feed-Forward Silencing Loop between Histone and DNA. PLoS Genet, 13:e1006551. PubMed | DOI

Bazakos C, Hanemian M, Trontin C, Jiménez-Gómez JM, Loudet O (2017). New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype. Annu Rev Plant Biol, 68:435-455. PubMed | DOI