Research teams

The Plant Observatory - Phenoscope

PO-Pheno 3 members

Key publications
Xue Z, Ferrand M, Gilbault E, Zurfluh O, Clément G, Marmagne A, Huguet S, Jiménez-Gómez JM, Krapp A, Meyer C, Loudet O (2024). Natural variation in response to combined water and nitrogen deficiencies in Arabidopsis. Plant Cell, koae173. PubMed | DOI
Elfarargi AF, Gilbault E, Döring N, Neto C, Fulgione A, Weber APM, Loudet O, Hancock AM (2023). Genomic basis of adaptation to a novel precipitation regime. Mol Biol Evol, msad031. PubMed | DOI
Hanemian M, Vasseur F, Marchadier E, Gilbault E, Bresson J, Gy I, Violle C, Loudet O (2020). Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nat Commun, 11(1):4140. PubMed | DOI
Marchadier E, Hanemian M, Tisne S, Bach L, Bazakos C, Gilbault E, Haddadi P, Virlouvet L, Loudet O (2019). The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana. PLoS Genet, 15:e1007954. PubMed | DOI
Tisne S, Serrand Y, Bach L, Gilbault E, Ben Ameur R, Balasse H, Voisin R, Bouchez D, Durand-Tardif M, Guerche P, Chareyron G, Da Rugna J, Camilleri C, Loudet O (2013). Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant J, 74:534-544. PubMed | DOI
All publications (2006-to date)
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Capilla-Pérez L, Solier V, Gilbault E, Lian Q, Goel M, Huettel B, Keurentjes JJ, Loudet O, Mercier R (2024). Enhanced recombination empowers the detection and mapping of Quantitative Trait Loci. Commun Biol, 7(1):829. PubMed | DOI
Xue Z, Ferrand M, Gilbault E, Zurfluh O, Clément G, Marmagne A, Huguet S, Jiménez-Gómez JM, Krapp A, Meyer C, Loudet O (2024). Natural variation in response to combined water and nitrogen deficiencies in Arabidopsis. Plant Cell, koae173. PubMed | DOI
Liehrmann A, Delannoy E, Launay-Avon A, Gilbault E, Loudet O, Castandet B, Rigaill G (2023). DiffSegR: an RNA-seq data driven method for differential expression analysis using changepoint detection. NAR Genom Bioinform, 5(4):lqad098. PubMed | DOI
Elfarargi AF, Gilbault E, Döring N, Neto C, Fulgione A, Weber APM, Loudet O, Hancock AM (2023). Genomic basis of adaptation to a novel precipitation regime. Mol Biol Evol, msad031. PubMed | DOI
Viana AJC, Matiolli CC, Newman DW, Vieira JGP, Duarte GT, Martins MCM, Gilbault E, Hotta CT, Caldana C, Vincentz M (2021). The sugar-responsive circadian clock regulator bZIP63 modulates plant growth. New Phytol. PubMed | DOI
Hanemian M, Vasseur F, Marchadier E, Gilbault E, Bresson J, Gy I, Violle C, Loudet O (2020). Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nat Commun, 11(1):4140. PubMed | DOI
Van Dooren TJM, Silveira AB, Gilbault E, Jiménez-Gómez JM, Martin A, Bach L, Tisne S, Quadrana L, Loudet O, Colot V (2020). Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects. J Exp Bot, 71:3588-3602. PubMed | DOI
Marchadier E, Hanemian M, Tisne S, Bach L, Bazakos C, Gilbault E, Haddadi P, Virlouvet L, Loudet O (2019). The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana. PLoS Genet, 15:e1007954. PubMed | DOI
Waltz F, Nguyen TT, Arrive M, Bochler A, Chicher J, Hammann P, Kuhn L, Quadrado M, Mireau H, Hashem Y, Giege P (2019). Small is big in Arabidopsis mitochondrial ribosome. Nat Plants, 5:106-117. PubMed | DOI
Bazakos C, Hanemian M, Trontin C, Jiménez-Gómez JM, Loudet O (2017). New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype. Annu Rev Plant Biol, 68:435-455. PubMed | DOI
Viaud G, Loudet O, Cournede PH (2016). Leaf Segmentation and Tracking in Arabidopsis thaliana Combined to an Organ-Scale Plant Model for Genotypic Differentiation. Front Plant Sci, 7:2057. PubMed | DOI
Tisne S, Serrand Y, Bach L, Gilbault E, Ben Ameur R, Balasse H, Voisin R, Bouchez D, Durand-Tardif M, Guerche P, Chareyron G, Da Rugna J, Camilleri C, Loudet O (2013). Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant J, 74:534-544. PubMed | DOI
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