Biomass, Seeds and Bioproducts

Meng PH, Macquet A, Loudet O, Marion-Poll A, North HM (2008). Analysis of natural allelic variation controlling Arabidopsis thaliana seed germinability in response to cold and dark: identification of three major quantitative trait loci. Mol Plant, 1:145-154. PubMed | DOI

Ogé L, Bourdais G, Bove J, Collet B, Godin B, Granier F, Boutin JP, Job D, Jullien M, Grappin P (2008). Protein repair L-isoaspartyl methyltransferase 1 is involved in both seed longevity and germination vigor in Arabidopsis. Plant Cell, 20:3022-3037. PubMed | DOI

Rajjou L, Debeaujon I (2008). Seed longevity: survival and maintenance of high germination ability of dry seeds. C R Biol, 331:796-805. PubMed | DOI

Rajjou L, Lovigny Y, Groot SP, Belghazi M, Job C, Job D (2008). Proteome-wide characterization of seed aging in Arabidopsis: a comparison between artificial and natural aging protocols. Plant Physiol, 148:620-641. PubMed | DOI

Bach L, Michaelson LV, Haslam R, Bellec Y, Gissot L, Marion J, Da Costa M, Boutin JP, Miquel M, Tellier F, Domergue F, Markham JE, Beaudoin F, Napier JA, Faure JD (2008). The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development. Proc Natl Acad Sci U S A, 105:14727-14731. PubMed | DOI

Marion J, Bach L, Bellec Y, Meyer C, Gissot L, Faure JD (2008). Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. Plant J, 56:169-179. PubMed | DOI

Polge C, Jossier M, Crozet P, Gissot L, Thomas M (2008). Beta-subunits of the SnRK1 complexes share a common ancestral function together with expression and function specificities; physical interaction with nitrate reductase specifically occurs via AKINbeta1-subunit. Plant Physiol, 148:1570-1582. PubMed | DOI

Truernit E, Bauby H, Dubreucq B, Grandjean O, Runions J, Barthelemy J, Palauqui JC (2008). High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis. Plant Cell, 20:1494-1503. PubMed | DOI

Baud S, Lepiniec L (2008). Compared analysis of the regulatory systems controlling lipogenesis in hepatocytes of mice and in maturing oilseeds of Arabidopsis. C R Biol, 331:737-745. PubMed | DOI

Berdasco M, Alcazar R, Garcia-Ortiz MV, Ballestar E, Fernandez AF, Roldan-Arjona T, Tiburcio AF, Altabella T, Buisine N, Quesneville H, Baudry A, Lepiniec L, Alaminos M, Rodriguez R, Lloyd A, Colot V, Bender J, Canal MJ, Esteller M, Fraga MF (2008). Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells. PLoS One, 3:e3306. PubMed | DOI

Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, Routaboul JM, Alboresi A, Weisshaar B, Lepiniec L (2008). MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana. Plant J, 55:940-953. PubMed | DOI

Luceri C, Giovannelli L, Pitozzi V, Toti S, Castagnini C, Routaboul JM, Lepiniec L, Larrosa M, Dolara P (2008). Liver and colon DNA oxidative damage and gene expression profiles of rats fed Arabidopsis thaliana mutant seeds containing contrasted flavonoids. Food Chem Toxicol, 46:1213-1220. PubMed | DOI

Nunez JG, Kronenberger J, Wuilleme S, Lepiniec L, Rochat C (2008). Study of AtSUS2 localization in seeds reveals a strong association with plastids. Plant Cell Physiol, 49:1621-1626. PubMed | DOI

Santos-Mendoza M, Dubreucq B, Baud S, Parcy F, Caboche M, Lepiniec L (2008). Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis. Plant J, 54:608-620. PubMed | DOI

Truernit E, Haseloff J (2008). A simple way to identify non-viable cells within living plant tissue using confocal microscopy. Plant Methods, 4:15. PubMed | DOI

Wilson A, Punginelli C, Gall A, Bonetti C, Alexandre M, Routaboul JM, Kerfeld CA, Van Grondelle R, Robert B, Kennis JT, Kirilovsky D (2008). A photoactive carotenoid protein acting as light intensity sensor. Proc Natl Acad Sci U S A, 105:12075-12080. PubMed | DOI

Baumberger S, Abaecherli A, Fasching M, Gellerstedt G, Gosselink R, Hortling B, Li J, Saake B, De Jong E (2007). Molar mass determination of lignins by size-exclusion chromatography: towards standardisation of the method. Holzforschung, 61:459-468. PubMed | DOI

Besseau S, Hoffmann L, Geoffroy P, Lapierre C, Pollet B, Legrand M (2007). Flavonoid accumulation in Arabidopsis repressed in lignin synthesis affects auxin transport and plant growth. Plant Cell, 19:148-162. PubMed | DOI

Do CT, Pollet B, Thévenin J, Sibout R, Denoue D, Barriere Y, Lapierre C, Jouanin L (2007). Both caffeoyl Coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis. Planta, 226:1117-1129. PubMed | DOI

Es-Safi N, Kerhoas L, Ducrot P (2007). Fragmentation study of globularin through positive and negative ESI/MS, CID/MS, and tandem MS/MS. Spectrosc Lett, 40:695-714. PubMed | DOI

Es-Safi NE, Ghidouche S, Ducrot PH (2007). Flavonoids: hemisynthesis, reactivity, characterization and free radical scavenging activity. Molecules, 12:2228-2258. PubMed | DOI

Es-Safi NE, Kerhoas L, Ducrot PH (2007). Fragmentation study of iridoid glucosides through positive and negative electrospray ionization, collision-induced dissociation and tandem mass spectrometry. Rapid Commun Mass Spectrom, 21:1165-1175. PubMed | DOI

Es-Safi NE, Kollmann A, Khlifi S, Ducrot PH (2007). Antioxidative effect of compounds isolated from Globularia alypum L. structure–activity relationship. LWT - Food Science and Technology, 40:1246-1252. PubMed | DOI

Guillaumie S, San-Clemente H, Deswarte C, Martinez Y, Lapierre C, Murigneux A, Barriere Y, Pichon M, Goffner D (2007). MAIZEWALL. Database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize. Plant Physiol, 143:339-363. PubMed | DOI

Halpin C, Thain S, Tilston E, Guiney E, Lapierre C, Hopkins D (2007). Ecological impacts of trees with modified lignin. Tree Genet Genomes, 3:101-110. PubMed | DOI

Leple JC, Dauwe R, Morreel K, Storme V, Lapierre C, Pollet B, Naumann A, Kang KY, Kim H, Ruel K, Lefebvre A, Joseleau JP, Grima-Pettenati J, De Rycke R, Andersson-Gunneras S, Erban A, Fehrle I, Petit-Conil M, Kopka J, Polle A, Messens E, Sundberg B, Mansfield SD, Ralph J, Pilate G, Boerjan W (2007). Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell, 19:3669-3691. PubMed | DOI

Méchin V, Baumberger S, Pollet B, Lapierre C (2007). Peroxidase activity can dictate the in vitro lignin dehydrogenative polymer structure. Phytochemistry, 68:571-579. PubMed | DOI

Pitre FE, Pollet B, Lafarguette F, Cooke JE, Mackay JJ, Lapierre C (2007). Effects of increased nitrogen supply on the lignification of poplar wood. J Agric Food Chem, 55:10306-10314. PubMed | DOI

D'Andrea S, Canonge M, Beopoulos A, Jolivet P, Hartmann MA, Miquel M, Lepiniec L, Chardot T (2007). At5g50600 encodes a member of the short-chain dehydrogenase reductase superfamily with 11beta- and 17beta-hydroxysteroid dehydrogenase activities associated with Arabidopsis thaliana seed oil bodies. Biochimie, 89:222-229. PubMed | DOI

D'Andrea S, Jolivet P, Boulard C, Larre C, Froissard M, Chardot T (2007). Selective one-step extraction of Arabidopsis thaliana seed oleosins using organic solvents. J Agric Food Chem, 55:10008-10015. PubMed | DOI

Denery-Papini S, Lauriere M, Branlard G, Morisset M, Pecquet C, Choudat D, Merlino M, Pineau F, Popineau Y, Boulenc E, Bouchez-Mahiout I, Bodinier M, Moneret-Vautrin DA (2007). Influence of the allelic variants encoded at the Gli-B1 locus, responsible for a major allergen of wheat, on IgE reactivity for patients suffering from food allergy to wheat. J Agric Food Chem, 55:799-805. PubMed | DOI

Froissard M, Belgareh-Touze N, Dias M, Buisson N, Camadro JM, Haguenauer-Tsapis R, Lesuisse E (2007). Trafficking of siderophore transporters in Saccharomyces cerevisiae and intracellular fate of ferrioxamine B conjugates. Traffic, 8:1601-1616. PubMed | DOI

Jolivet P, Bordes F, Fudalej F, Cancino M, Vignaud C, Dossat V, Burghoffer C, Marty A, Chardot T, Nicaud JM (2007). Analysis of Yarrowia lipolytica extracellular lipase Lip2p glycosylation. FEMS Yeast Res, 7:1317-1327. PubMed | DOI

Lauriere M, Pecquet C, Boulenc E, Bouchez-Mahiout I, Snegaroff J, Choudat D, Raison-Peyron N, Vigan M, Branlard G (2007). Genetic differences in omega-gliadins involved in two different immediate food hypersensitivities to wheat. Allergy, 62:890-896. PubMed | DOI

Ofiteru A, Bucurenci N, Alexov E, Bertrand T, Briozzo P, Munier-Lehmann H, Gilles AM (2007). Structural and functional consequences of single amino acid substitutions in the pyrimidine base binding pocket of Escherichia coli CMP kinase. FEBS J, 274:3363-3373. PubMed | DOI

Purkrtova Z, D'Andrea S, Jolivet P, Lipovova P, Kralova B, Kodicek M, Chardot T (2007). Structural properties of caleosin: a MS and CD study. Arch Biochem Biophys, 464:335-343. PubMed | DOI

Snegaroff J, Branlard G, Bouchez-Mahiout I, Laudet B, Tylichova M, Chardot T, Pecquet C, Choudat D, Raison-Peyron N, Vigan M, Kerre S, Lauriere M (2007). Recombinant proteins and peptides as tools for studying IgE reactivity with low-molecular-weight glutenin subunits in some wheat allergies. J Agric Food Chem, 55:9837-9845. PubMed | DOI

Dall'osto L, Cazzaniga S, North HM, Marion-Poll A, Bassi R (2007). The Arabidopsis aba4-1 mutant reveals a specific function for neoxanthin in protection against photooxidative stress. Plant Cell, 19:1048-1064. PubMed | DOI

Macquet A, Ralet MC, Kronenberger J, Marion-Poll A, North HM (2007). In situ, chemical and macromolecular study of the composition of Arabidopsis thaliana seed coat mucilage. Plant Cell Physiol, 48:984-999. PubMed | DOI

Macquet A, Ralet MC, Loudet O, Kronenberger J, Mouille G, Marion-Poll A, North HM (2007). A naturally occurring mutation in an Arabidopsis accession affects a beta-D-galactosidase that increases the hydrophilic potential of rhamnogalacturonan I in seed mucilage. Plant Cell, 19:3990-4006. PubMed | DOI

Marinova K, Pourcel L, Weder B, Schwarz M, Barron D, Routaboul JM, Debeaujon I, Klein M (2007). The Arabidopsis MATE transporter TT12 acts as a vacuolar flavonoid/H+ -antiporter active in proanthocyanidin-accumulating cells of the seed coat. Plant Cell, 19:2023-2038. PubMed | DOI

North HM, De Almeida A, Boutin JP, Frey A, To A, Botran L, Sotta B, Marion-Poll A (2007). The Arabidopsis ABA-deficient mutant aba4 demonstrates that the major route for stress-induced ABA accumulation is via neoxanthin isomers. Plant J, 50:810-824. PubMed | DOI

Bauby H, Divol F, Truernit E, Grandjean O, Palauqui JC (2007). Protophloem differentiation in early Arabidopsis thaliana development. Plant Cell Physiol, 48:97-109. PubMed | DOI

Baud S, Mendoza MS, To A, Harscoet E, Lepiniec L, Dubreucq B (2007). WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis. Plant J, 50:825-838. PubMed | DOI

Baud S, Wuilleme S, Dubreucq B, De Almeida A, Vuagnat C, Lepiniec L, Miquel M, Rochat C (2007). Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana. Plant J, 52:405-419. PubMed | DOI

Pourcel L, Routaboul JM, Cheynier V, Lepiniec L, Debeaujon I (2007). Flavonoid oxidation in plants: from biochemical properties to physiological functions. Trends Plant Sci, 12:29-36. PubMed | DOI

Triques K, Sturbois B, Gallais S, Dalmais M, Chauvin S, Clepet C, Aubourg S, Rameau C, Caboche M, Bendahmane A (2007). Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea. Plant J, 51:1116-1125. PubMed | DOI

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D (2006). A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol, 140:30-48. PubMed | DOI

Barriere Y, Alber D, Dolstra O, Lapierre C, Motto M, Ordas A, Van Waes J, Vlasminkel L, Welcker C, Monod JP (2006). Past and prospects of forage maize breeding in Europe. II. History, germplasm evolution and correlative agronomic changes. Maydica, 51:435-449. PubMed | DOI

Boyer FD, Hanna I (2006). An efficient construction of bicyclic systems containing a seven-membered ring by tandem ring-closing metathesis reactions of dienynes. J Organometal Chem, 691:5181-5188. PubMed | DOI