Biomass, Seeds and Bioproducts

Liang W, Zamarreño AM, Torres-Montilla S, de la Torre A, Totozafy JC, Kaji T, Ueda M, Corso M, Garcia-Mina JM, Solano R, Chini A (2024). dn-OPDA conjugation with amino acids inhibits its phytohormone bioactivity in Marchantia polymorpha. Plant Physiol, kiae610. PubMed | DOI

Avezum L, Ollier L, Siguemoto E, Rajjou L, Mestres C (2024). Hydrolysis and diffusion of raffinose oligosaccharides family products in chickpeas, lentils, and beans under different pH and temperature steeping conditions. Food Res Int, 191:114732. PubMed | DOI

Liu C, Hatzianestis IH, [...], D'Andrea S, [....], Bozhkov PV, Moschou PN (2024). Seed longevity is controlled by metacaspases. Nat Commun, 15(1):6748. PubMed | DOI

Peng S, Rajjou L (2024). Advancing plant biology through deep learning-powered natural language processing. Plant Cell Rep, 43(8):208. PubMed | DOI

Raimondi D, Passemiers A, Verplaetse N, Corso M, Ferrero-Serrano A, Nazzicari N, Biscarini F, Fariselli P, Moreau Y (2024). Biologically meaningful genome interpretation models to address data underdetermination for the leaf and seed ionome prediction in Arabidopsis thaliana. Sci Rep, 14(1):13188. PubMed | DOI

Dhahak A, Cézard L, Baumberger S, Peixinho J (2024). Kinetic, products and shrinkage for the pyrolysis of flax fibers. Journal of Analytical and Applied Pyrolysis, Vol 180, 106538. DOI

Jayabalan T, Pandard P, Binotto G, Gomes J, Ceschini X, Aube A, Gondelle F, Pion F, Baumberger S, Jongerius A, Gosselink RJA, Cozzoni E, Marlair G (2024). Safety profiling of technical lignins originating from various bioresources and conversion processes. Heliyon, 10(12):e32131. PubMed | DOI

Amokrane L, Pokotylo I, Acket S, Ducloy A, Troncoso-Ponce MA, Cacas JL, Ruelland E (2024). Phospholipid Signaling in Crop Plants: A Field to Explore. Plants, 13(11):1532. PubMed | DOI

Nisler J, Klimeš P, Koncitíková R, Kadlecová A, Voller J, Chalaki M, Karampelias M, Murvanidze N, Werbrouck SPO, Kopecný D, Havlícek L, De Diego N, Briozzo P, Moréra S, Zalabák D, Spíchal L (2024). Cytokinin oxidase/dehydrogenase inhibitors: progress towards agricultural practice. J Exp Bot, erae239. PubMed | DOI

Bhati KK, Luong AM, Dittrich-Domergue F, D'Andrea S, Moreau P, Batoko H (2024). Possible crosstalk between the Arabidopsis TSPO-related protein and the transcription factor WRINKLED1. Biochimie, S0300-9084(24)00105-6. PubMed | DOI

Chelysheva L, Morin H, Biot E, Nicolas A, Rech P, Da Costa M, Barel L, Laufs P, Palauqui JC (2024). M2WISH: An easy and efficient protocol for whole-mount mRNA in situ hybridization that allows 3D cell resolution of gene expression in Arabidopsis thaliana. Plant J, doi: 10.1111/tpj.16792. PubMed | DOI

Piedrahita-Rodríguez S, Alzate-Ramírez AF, Baumberger S, Cézard L, Ortiz-Sánchez M, Garcia DAE, Arenas AMZ, Moustakas K, Alzate CAC (2024). Strategy for the analysis of lignocellulosic biomass to select a viable transformation route in the Colombian context. Environ Sci Pollut Res Int, 2024 May 2. PubMed | DOI

Hadjiefstathiou C, Manière A, Attia J, Pion F, Ducrot PH, Gore E, Grisel M (2024). Lignins interfacial behavior tailored by formulation parameters. Journal of Molecular Liquids, 399: 124415. DOI

Goelzer A, Rajjou L, Chardon F, Loudet O, Fromion V (2024). Resource allocation modeling for autonomous prediction of plant cell phenotypes. Metab Eng, 83:86-101. PubMed | DOI

Rashid GMM, Rivière G, Cottyn B, Majira A, Cézard L, Sodré V, Lam R, Fairbairn JA, Baumberger S, Bugg TDH (2024). Ether Bond Cleavage of a Phenylcoumaran β-5 Lignin Model Compound and Polymeric Lignin Catalysed by a LigE-type Etherase from Agrobacterium sp. Chembiochem, e202400132. PubMed | DOI

Ducloy A, Azzopardi M, Ivsic C, Cueff G, Sourdeval D, Charif D, Cacas JL (2024). A transcriptomic dataset for investigating the Arabidopsis Unfolded Protein Response under chronic, proteotoxic endoplasmic reticulum stress. Data Brief, 53:110243. PubMed | DOI

Barreda L, Brosse C, Boutet S, Perreau F, Rajjou L, Lepiniec L, Corso M (2024). Specialized metabolite modifications in Brassicaceae seeds and plants: diversity, functions and related enzymes. Nat Prod Rep, doi: 10.1039/d3np00043e. PubMed | DOI

Bianchetti G, Clouet V, Legeai F, Baron C, Gazengel K, Vu BL, Baud S, To A, Manzanares-Dauleux MJ, Buitink J, Nesi N (2024). Identification of transcriptional modules linked to the drought response of Brassica napus during seed development and their mitigation by early biotic stress. Physiol Plant, 176(1):e14130. PubMed | DOI

Hadjiefstathiou C, Manière A, Attia J, Pion F, Ducrot PH, Grisel M, Gore E (2024). Sensory signature of lignins, new generation of bio-based ingredients in cosmetics. Int J Biol Macromol, 260(1):129399. PubMed | DOI

Gissot L, Fontaine F, Kelemen Z, Dao O, Bouchez I, Deruyffelaere C, Winkler M, Da Costa A, Pierre F, Meziadi C, Faure JD, Froissard M (2023). E and M SARS-CoV-2 membrane protein expression and enrichment with plant lipid droplets. Biotechnol J, e2300512. PubMed | DOI

Aoi Y, Benamar A, Saulnier L, Ralet MC, North HM (2023). Biochemical data documenting variations in mucilage polysaccharides in a range of glycosyltransferase mutants. Sci Data, 10(1):702. PubMed | DOI

Chen X, Ferchaud N, Briozzo P, Machover D, Simonson T (2023). PLP-Dependent Enzyme Methionine γ-Lyase: Insights into the Michaelis Complex from Molecular Dynamics and Free Energy Simulations. Biochemistry, doi: 10.1021/acs.biochem.3c00355. PubMed | DOI

Lailheugue V, Merlin I, Boutet S, Perreau F, Pouvreau JB, Delgrange S, Ducrot PH, Cottyn B, Mouille G, Lauvergeat V (2023). Vitislactone, a non-canonical strigolactone exudated by grapevine rootstocks in response to nitrogen starvation. Phytochemistry, 215:113837. PubMed | DOI

Piedrahita-Rodríguez S, Baumberger S, Cézard L, Poveda-Giraldo J, Alzate-Ramírez AF, Alzate CAC (2023). Comparative Analysis of Trifluoracetic Acid Pretreatment for Lignocellulosic Materials. Materials, 16(15):5502. PubMed | DOI

Sarieddine A, Hadjiefstathiou C, Majira A, Pion F, Ducrot PH (2023). Biocatalytic selective acylation of technical lignins: a new route for the design of new biobased additives for industrial formulations. Front Chem, 11:1239479. PubMed | DOI

Bouchnak I, Coulon D, Salis V, D'Andrea S, Bréhélin C (2023). Lipid droplets are versatile organelles involved in plant development and plant response to environmental changes. Front Plant Sci, 14:1193905. PubMed | DOI

Malric-Garajova S, Fortuna F, Pion F, Martin E, Thottathil A, Guillemain A, Doan A, Lomascolo A, Faulds CB, Baumberger S, Foulon L, Chabbert B, de Baynast H, Dubessay P, Audonnet F, Bertrand E, Sciara G, Tapin-Lingua S, Ducrot PH, Michaud P, Aguié-Béghin V, Record E (2023). Modification of a Marine Pine Kraft Lignin Sample by Enzymatic Treatment with a Pycnoporus cinnabarinus Laccase. Molecules, 28(12):4873. PubMed | DOI

Großkinsky DK, Faure JD, Gibon Y, Haslam RP, Usadel B, Zanetti F, Jonak C (2023). The potential of integrative phenomics to harness underutilized crops for improving stress resilience. Front Plant Sci, 14:1216337. PubMed | DOI

Barbosa ICR, De Bellis D, Flückiger I, Bellani E, Grangé-Guerment M, Hématy K, Geldner N (2023). Directed growth and fusion of membrane-wall microdomains requires CASP-mediated inhibition and displacement of secretory foci. Nat Commun, 14(1):1626. PubMed | DOI

Bellec A, Sow MD, Pont C, Civan P, Mardoc E, Duchemin W, Armisen D, Huneau C, Thévenin J, Vernoud V, Depege-Fargeix N, Maunas L, Escale B, Dubreucq B, Rogowsky PM, Berges H, Salse J (2023). Tracing 100 million years of grass genome evolutionary plasticity. Plant J, doi: 10.1111/tpj.16185. PubMed | DOI

An X, Totozafy JC, Peaucelle A, Jones CY, Willats WGT, Höfte H, Corso M, Verbruggen N (2023). Contrasting Cd accumulation of Arabidopsis halleri populations: a role for (1→4)-β-galactan in pectin. J Hazard Mater, 445:130581. PubMed | DOI

Sterken MG, Nijveen H, van Zanten M, Jiménez-Gómez JM, Geshnizjani N, Willems LaJ, Rienstra J, Hilhorst HWM, Ligterink W, Snoek BL (2023). Plasticity of maternal environment-dependent expression-QTLs of tomato seeds. Theor Appl Genet, 136(2):28. PubMed | DOI

Baud S, Corso M, Debeaujon I, Dubreucq B, Job D, Marion-Poll A, Miquel M, North HM, Rajjou L, Lepiniec L (2023). Recent progress in molecular genetics and omics-driven research in seed biology. C R Biol, 345(4):61-110. PubMed | DOI

Bělíček J, Ľuptáková, Kopecný D, Frömmel J, Vigouroux A, Ćavar Zeljković S, Jagic F, Briozzo P, Kopečný DJ, Tarkowski P, Nisler J, De Diego N, Moréra S, Kopecná M (2023). Biochemical and structural basis of polyamine, lysine and ornithine acetylation catalyzed by spermine/spermidine N-acetyl transferase in moss and maize. Plant J, doi: 10.1111/tpj.16148. PubMed | DOI

Vachon J, Assad-Alkhateb D, de Araujo Hsia L, Lora JH, Baumberger S (2023). Effect of compatibilizers on polyethylene-eucalyptus lignin blends. J Appl Polym Sci, 140: e53695. DOI

Shafiei R, Hooper M, Mcclellan C, Oakey H, Stephens J, Lapierre C, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C (2023). Downregulation of barley ferulate 5-hydroxylase dramatically alters straw lignin structure without impact on mechanical properties. Front Plant Sci, 13:1125003. PubMed | DOI

de L TovillaCoutino M, Passot S, Trelea IC, Ropers MH, Gohon Y, Fonseca F (2023). Multi-objective optimization of frozen and freeze-dried Lactobacillus delbrueckii subsp. bulgaricus CFL1 production via the modification of fermentation conditions. J Appl Microbiol, lxad003. PubMed | DOI

Lopez C, Sotin H, Rabesona H, Novales B, Le Quéré JM, Froissard M, Faure JD, Guyot S, Anton M (2023). Oil Bodies from Chia (Salvia hispanica L.) and Camelina (Camelina sativa L.) Seeds for Innovative Food Applications: Microstructure, Composition and Physical Stability. Foods, 12(1):211. PubMed | DOI

Nagel M, Arc E., Rajjou L, Cueff G, Bailly M, Clément G, Sanchez-Vicente I, Bailly C, Seal CE, Roach T, Rolletschek H, Lorenzo O, Borner A, Kranner I (2022). Impacts of drought and elevated temperature on the seeds of malting barley. Front Plant Sci, 13:1049323. PubMed | DOI

Matar N, Macadré C, Ammar GAG, Peres A, Collet B, El Boustany N, Rajjou L, As-Sadi F, Dufresne M, Ratet P (2022). Identification of beneficial Lebanese Trichoderma spp. wheat endophytes. Front Plant Sci, 13:1017890. PubMed | DOI

Chardot T (2022). A comparison of natural and induced diversity in plant oils. OCL, 29:34. DOI

Bellec Y, Guyon-Debast A, Francois T, Gissot L, Biot E, Nogué F, Faure JD, Tepfer M (2022). New Flowering and Architecture Traits Mediated by Multiplex CRISPR-Cas9 Gene Editing in Hexaploid Camelina sativa. Agronomy, 12(8): 1873. DOI

Alberghini B, Zanetti F, Corso M, Boutet S, Lepiniec L, Vecchi A, Monti A (2022). Camelina [Camelina sativa (L.) Crantz] seeds as a multi-purpose feedstock for bio-based applications. Ind Crops Prod, 182: 114944. DOI

Perrot-Dockès M., Lévy-Leduc C, Rajjou L (2022). Estimation of Large Block Structured Covariance Matrices: Application to ‘Multi-Omic’ Approaches to Study Seed Quality. J R Stat Soc Series C, 71:119–147. DOI

Brancourt-Hulmel M, Arnoult S, Cézard L, El Hage F, Gineau E, Girones J, Griveau Y, Jacquemot MP, Jaffuel S, Mignot E, Mouille G, Lapierre C, Legée F, Méchin V, Navard P, Vo LTT, Reymond M (2022). A Comparative Study of Maize and Miscanthus Regarding Cell-Wall Composition and Stem Anatomy for Conversion into Bioethanol and Polymer Composites. BioEnergy Research, 15: 777–791. DOI

Chen X, Briozzo P, Machover D, Simonson T (2022). A Computational Model for the PLP-Dependent Enzyme Methionine ?-Lyase. Front Mol Biosci, 9:886358. PubMed | DOI

Mameri H, Gaudin JC, Lollier V, Tranquet O, Brossard C, Pietri M, Marion D, Codreanu-Morel F, Beaudouin E, Wien F, Gohon Y, Briozzo P, Denery-Papini S (2022). Critical structural elements for the antigenicity of wheat allergen LTP1 (Tri a 14) revealed by site-directed mutagenesis. Sci Rep, 12(1):12253. PubMed | DOI

Cueff G, Rajjou L, Hoang HH, Bailly C, Corbineau F, Leymarie J (2022). In-Depth Proteomic Analysis of the Secondary Dormancy Induction by Hypoxia or High Temperature in Barley Grains. Plant Cell Physiol, pcac021. PubMed | DOI

Sano N, Lounifi I, Cueff G, Collet B, Clément G, Balzergue S, Huguet S, Valot B, Galland M, Rajjou L (2022). Multi-Omics Approaches Unravel Specific Features of Embryo and Endosperm in Rice Seed Germination. Front Plant Sci, 13:867263. PubMed | DOI

Shwartz I, Yahav C, Kovetz N, Levy M, Israeli A, Bar M, Duval KL, Krall EG, Teboul N, Jiménez-Gómez JM, Deal RB, Ori N (2022). The VIL gene CRAWLING ELEPHANT controls maturation and differentiation in tomato via polycomb silencing. PLoS Genet, 18(3):e1009633. PubMed | DOI