Genome Biology

Tisne S, Serrand Y, Bach L, Gilbault E, Ben Ameur R, Balasse H, Voisin R, Bouchez D, Durand-Tardif M, Guerche P, Chareyron G, Da Rugna J, Camilleri C, Loudet O (2013). Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant J, 74:534-544. PubMed | DOI

Kamisugi Y, Schaefer DG, Kozak J, Charlot F, Vrielynck N, Hola M, Angelis KJ, Cuming AC, Nogué F (2012). MRE11 and RAD50, but not NBS1, are essential for gene targeting in the moss Physcomitrella patens. Nucleic Acids Res, 40:3496-3510. PubMed | DOI

Paul L, Angevin F, Collonnier C, Messean A (2012). Impact of gene stacking on gene flow: the case of maize. Transgenic Res, 21:243-256. PubMed | DOI

Thévenin J, Dubos C, Xu W, Le Gourrierec J, Kelemen Z, Charlot F, Nogué F, Lepiniec L, Dubreucq B (2012). A new system for fast and quantitative analysis of heterologous gene expression in plants. New Phytol, 193:504-512. PubMed | DOI

Vivancos J, Spinner L, Mazubert C, Charlot F, Paquet N, Thareau V, Dron M, Nogué F, Charon C (2012). The function of the RNA-binding protein TEL1 in moss reveals ancient regulatory mechanisms of shoot development. Plant Mol Biol, 78:323-336. PubMed | DOI

Jauvion V, Rivard M, Bouteiller N, Elmayan T, Vaucheret H (2012). RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS. PLoS One, 7:e29785. PubMed | DOI

Jouannet V, Moreno AB, Elmayan T, Vaucheret H, Crespi MD, Maizel A (2012). Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J, 31:1704-1713. PubMed | DOI

Le Masson I, Jauvion V, Bouteiller N, Rivard M, Elmayan T, Vaucheret H (2012). Mutations in the Arabidopsis H3K4me2/3 demethylase JMJ14 suppress posttranscriptional gene silencing by decreasing transgene transcription. Plant Cell, 24:3603-3612. PubMed | DOI

Parent JS, Martinez De Alba AE, Vaucheret H (2012). The origin and effect of small RNA signaling in plants. Front Plant Sci, 3:179. PubMed | DOI

Vaucheret H, Chupeau Y (2012). Ingested plant miRNAs regulate gene expression in animals. Cell Res, 22:3-5. PubMed | DOI

Chelysheva L, Vezon D, Chambon A, Gendrot G, Pereira L, Lemhemdi A, Vrielynck N, Le Guin S, Novatchkova M, Grelon M (2012). The Arabidopsis HEI10 is a new ZMM protein related to Zip3. PLoS Genet, 8:e1002799. PubMed | DOI

Crismani W, Girard C, Froger N, Pradillo M, Santos JL, Chelysheva L, Copenhaver GP, Horlow C, Mercier R (2012). FANCM limits meiotic crossovers. Science, 336:1588-1590. PubMed | DOI

Crismani W, Mercier R (2012). What limits meiotic crossovers?. Cell Cycle, 11:3527-3528. PubMed | DOI

Cromer L, Heyman J, Touati S, Harashima H, Araou E, Girard C, Horlow C, Wassmann K, Schnittger A, De Veylder L, Mercier R (2012). OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM. PLoS Genet, 8:e1002865. PubMed | DOI

Eloy NB, Gonzalez N, Van Leene J, Maleux K, Vanhaeren H, De Milde L, Dhondt S, Vercruysse L, Witters E, Mercier R, Cromer L, Beemster GT, Remaut H, Van Montagu MC, De Jaeger G, Ferreira PC, Inzé D (2012). SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization. Proc Natl Acad Sci U S A, 109:13853-13858. PubMed | DOI

Nicolas SD, Monod H, Eber F, Chevre AM, Jenczewski E (2012). Non-random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization. Plant J, 70:691-703. PubMed | DOI

Yelina NE, Choi K, Chelysheva L, Macaulay M, De Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP, Mézard C, Kelly KA, Henderson IR (2012). Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants. PLoS Genet, 8:e1002844. PubMed | DOI

Budar F, Fujii S (2012). Cytonuclear Adaptation in Plants. Adv Bot Res, 63:99-126. PubMed | DOI

Matyasek R, Renny-Byfield S, Fulnecek J, Macas J, Grandbastien MA, Nichols R, Leitch A, Kovarik A (2012). Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids. BMC Genomics, 13:722. PubMed | DOI

Parisod C, Mhiri C, Lim KY, Clarkson JJ, Chase MW, Leitch AR, Grandbastien MA (2012). Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes. PLoS One, 7:e50352. PubMed | DOI

Zerjal T, Rousselet A, Mhiri C, Combes V, Madur D, Grandbastien MA, Charcosset A, Tenaillon MI (2012). Maize genetic diversity and association mapping using transposable element insertion polymorphisms. Theor Appl Genet, 124:1521-1537. PubMed | DOI

Bouteille M, Rolland G, Balsera C, Loudet O, Muller B (2012). Disentangling the intertwined genetic bases of root and shoot growth in Arabidopsis. PLoS One, 7:e32319. PubMed | DOI

Cubillos FA, Coustham V, Loudet O (2012). Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants. Curr Opin Plant Biol, 15:192-198. PubMed | DOI

Cubillos FA, Yansouni J, Khalili H, Balzergue S, Elftieh S, Martin-Magniette ML, Serrand Y, Lepiniec L, Baud S, Dubreucq B, Renou JP, Camilleri C, Loudet O (2012). Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. BMC Genomics, 13:117. PubMed | DOI

Durand S, Bouché N, Perez Strand E, Loudet O, Camilleri C (2012). Rapid establishment of genetic incompatibility through natural epigenetic variation. Curr Biol, 22:326-331. PubMed | DOI

Jasinski S, Lécureuil A, Miquel M, Loudet O, Raffaele S, Froissard M, Guerche P (2012). Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in Arabidopsis thaliana. PLoS One, 7:e49261. PubMed | DOI

Pineau C, Loubet S, Lefoulon C, Chalies C, Fizames C, Lacombe B, Ferrand M, Loudet O, Berthomieu P, Richard O (2012). Natural variation at the FRD3 MATE transporter locus reveals cross-talk between Fe homeostasis and Zn tolerance in Arabidopsis thaliana. PLoS Genet, 8:e1003120. PubMed | DOI

Poormohammad Kiani S, Trontin C, Andreatta M, Simon M, Robert T, Salt DE, Loudet O (2012). Allelic heterogeneity and trade-off shape natural variation for response to soil micronutrient. PLoS Genet, 8:e1002814. PubMed | DOI

Routaboul JM, Dubos C, Beck G, Marquis C, Bidzinski P, Loudet O, Lepiniec L (2012). Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis. J Exp Bot, 63:3749-3764. PubMed | DOI

Simon M, Simon A, Martins F, Botran L, Tisne S, Granier F, Loudet O, Camilleri C (2012). DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions. Plant J, 69:1094-1101. PubMed | DOI

Marimuthu MP, Jolivet S, Ravi M, Pereira L, Davda JN, Cromer L, Wang L, Nogué F, Chan SW, Siddiqi I, Mercier R (2011). Synthetic clonal reproduction through seeds. Science, 331:876. PubMed | DOI

Proust H, Hoffmann B, Xie X, Yoneyama K, Schaefer DG, Nogué F, Rameau C (2011). Strigolactones regulate protonema branching and act as a quorum sensing-like signal in the moss Physcomitrella patens. Development, 138:1531-1539. PubMed | DOI

Hirsch J, Misson J, Crisp PA, David P, Bayle V, Estavillo GM, Javot H, Chiarenza S, Mallory AC, Maizel A, Declerck M, Pogson BJ, Vaucheret H, Crespi M, Desnos T, Thibaud MC, Nussaume L, Marin E (2011). A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots. PLoS One, 6:e16724. PubMed | DOI

Martinez De Alba AE, Jauvion V, Mallory AC, Bouteiller N, Vaucheret H (2011). The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA. Nucleic Acids Res, 39:9339-9344. PubMed | DOI

Maunoury N, Vaucheret H (2011). AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation. PLoS One, 6:e28729. PubMed | DOI

Pelissier T, Clavel M, Chaparro C, Pouch-Pelissier MN, Vaucheret H, Deragon JM (2011). Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA, 17:1502-1510. PubMed | DOI

Wang XB, Jovel J, Udomporn P, Wang Y, Wu Q, Li WX, Gasciolli V, Vaucheret H, Ding SW (2011). The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell, 23:1625-1638. PubMed | DOI

Chen S, Nelson M, Chevre AM, Jenczewski E, Li Z, Mason A, Meng J, Plummer J, Pradhan A, Siddique K, Snowdon R, Yan G, Zhou W, Cowling W (2011). Trigenomic Bridges for Brassica Improvement. Critical Reviews in Plant Sciences, 30:524-547. PubMed | DOI

Giraut L, Falque M, Drouaud J, Pereira L, Martin OC, Mézard C (2011). Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes. PLoS Genet, 7:e1002354. PubMed | DOI

Le Guen V, Garcia D, Doaré F, Mattos CRR, Condina V, Couturier C, Chambon A, Weber C, Espéout S, Seguin M (2011). A rubber tree’s durable resistance to Microcyclus ulei is conferred by a qualitative gene and a major quantitative resistance factor. Tree Genetics & Genomes, 7:877-889. PubMed | DOI

Libeau P, Durandet M, Granier F, Marquis C, Berthomé R, Renou JP, Taconnat-Soubirou L, Horlow C (2011). Gene expression profiling of Arabidopsis meiocytes. Plant Biol (Stuttg), 13:784-793. PubMed | DOI

Macaisne N, Vignard J, Mercier R (2011). SHOC1 and PTD form an XPF-ERCC1-like complex that is required for formation of class I crossovers. J Cell Sci, 124:2687-2691. PubMed | DOI

Szadkowski E, Eber F, Huteau V, Lode M, Coriton O, Jenczewski E, Chevre AM (2011). Polyploid formation pathways have an impact on genetic rearrangements in resynthesized Brassica napus. New Phytol, 191:884-894. PubMed | DOI

Budar F, Roux F (2011). The role of organelle genomes in plant adaptation: time to get to work!. Plant Signal Behav, 6:635-639. PubMed | DOI

Llorens C, Futami R, Covelli L, Dominguez-Escriba L, Viu JM, Tamarit D, Aguilar-Rodriguez J, Vicente-Ripolles M, Fuster G, Bernet GP, Maumus F, Munoz-Pomer A, Sempere JM, Latorre A, Moya A (2011). The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Res, 39:D70-74. PubMed | DOI

Renny-Byfield S, Chester M, Kovarik A, Le Comber SC, Grandbastien MA, Deloger M, Nichols RA, Macas J, Novak P, Chase MW, Leitch AR (2011). Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs. Mol Biol Evol, 28:2843-2854. PubMed | DOI

Géry C, Zuther E, Schulz E, Legoupi J, Chauveau A, Mckhann H, Hincha DK, Téoulé E (2011). Natural variation in the freezing tolerance of Arabidopsis thaliana: effects of RNAi-induced CBF depletion and QTL localisation vary among accessions. Plant Sci, 180:12-23. PubMed | DOI

Lefebvre V, Fortabat MN, Ducamp A, North HM, Maia-Grondard A, Trouverie J, Boursiac Y, Mouille G, Durand-Tardif M (2011). ESKIMO1 disruption in Arabidopsis alters vascular tissue and impairs water transport. PLoS One, 6:e16645. PubMed | DOI

Trontin C, Tisne S, Bach L, Loudet O (2011). What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants?. Curr Opin Plant Biol, 14:225-231. PubMed | DOI

Schaefer DG, Delacote F, Charlot F, Vrielynck N, Guyon-Debast A, Le Guin S, Neuhaus JM, Doutriaux MP, Nogué F (2010). RAD51 loss of function abolishes gene targeting and de-represses illegitimate integration in the moss Physcomitrella patens. DNA Repair (Amst), 9:526-533. PubMed | DOI