Biomass, Seeds and Bioproducts

Hématy K, De Bellis D, Wang X, Mähönen AP, Geldner N (2022). Analysis of exocyst function in endodermis reveals its widespread contribution and specificity of action. Plant Physiol, kiac019. PubMed | DOI

Boutet S, Barreda L, Perreau F, Totozafy JC, Mauve C, Gakière B, Delannoy E, Martin-Magniette ML, Monti A, Lepiniec L, Zanetti F, Corso M (2022). Untargeted metabolomic analyses reveal the diversity and plasticity of the specialized metabolome in seeds of different Camelina sativa genotypes. Plant J, 110(1):147-165. PubMed | DOI

Kazaz S, Miray R, Lepiniec L, Baud S (2022). Plant monounsaturated fatty acids: Diversity, biosynthesis, functions and uses. Prog Lipid Res, 85:101138. PubMed | DOI

Raimondi D, Corso M, Fariselli P, Moreau Y (2022). From genotype to phenotype in Arabidopsis thaliana: in-silico genome interpretation predicts 288 phenotypes from sequencing data. Nucleic Acids Res, 50(3):e16. PubMed | DOI

Rivarola Sena AC, Andres-Robin A, Vialette AC, Just J, Launay-Avon A, Borrega N, Dubreucq B, Scutt CP (2022). Custom methods to identify conserved genetic modules applied to novel transcriptomic data from Amborella trichopoda. J Exp Bot, erac044. PubMed | DOI

Rivière Q, Corso M, Ciortan M, Noël G, Verbruggen N, Defrance M (2022). Exploiting Genomic Features to Improve the Prediction of Transcription Factor Binding Sites in Plants. Plant Cell Physiol, pcac095. PubMed | DOI

Rouches E, Gómez-Alvarez H, Majira A, Martín-Moldes Z, Nogales J, Díaz E, Bugg TDH, Baumberger S (2021). Assessment strategy for bacterial lignin depolymerization: Kraft lignin and synthetic lignin bioconversion with Pseudomonas putida. Bioresour Technol Rep, 15: 100742. DOI

Kumar SPJ, Chintagunta AD, Reddy YM, Rajjou L, Kumar GV, Agarwal DK, Prasad SR, Simal-Gandara J (2021). Implications of reactive oxygen and nitrogen species in seed physiology for sustainable crop productivity under changing climate conditions. Current Plant Biology, 100197. DOI

Barron C, Devaux MF, Foucat L, Falourd X, Looten R, Joseph-Aime M, Durand S, Bonnin E, Lapierre C, Saulnier L, Rouau X, Guillon F (2021). Enzymatic degradation of maize shoots: monitoring of chemical and physical changes reveals different saccharification behaviors. Biotechnol Biofuels, 14(1):1. PubMed | DOI

Daou M, Bisotto A, Haon M, Oliveira Correia L, Cottyn B, Drula E, Garajová S, Bertrand E, Record E, Navarro D, Raouche S, Baumberger S, Faulds CB (2021). A Putative Lignin Copper Oxidase from Trichoderma reesei. J Fungi, 7(8):643. PubMed | DOI

Daou M, Farfan Soto C, Majira A, Cézard L, Cottyn B, Pion F, Navarro D, Oliveira Correia L, Drula E, Record E, Raouche S, Baumberger S, Faulds CB (2021). Fungal Treatment for the Valorization of Technical Soda Lignin. J Fungi, 7(1):39. PubMed | DOI

Di Giuseppe E, Girones J, Vo LTT, Gineau E, Lapierre C, Brancourt-Hulmel M, Arnoult-Carrier S, Navard P (2021). Polysaccharides and phenolics of miscanthus belowground cell walls and their influence on polyethylene composites. Carbohydr Polym, 251:117086. PubMed | DOI

Gerbin E, Rivière GN, Foulon L, Frapart YM, Cottyn B, Pernes M, Marcuello C, Godon B, Gainvors-Claisse A, Crônier D, Majira A, Österberg M, Kurek B, Baumberger S, Aguié-Béghin V (2021). Tuning the functional properties of lignocellulosic films by controlling the molecular and supramolecular structure of lignin. Int J Biol Macromol, 181:136-149. PubMed | DOI

Lapierre C, Sibout R, Laurans F, Lesage-Descauses MC, Déjardin A, Pilate G (2021). p-Coumaroylation of poplar lignins impacts lignin structure and improves wood saccharification. Plant Physiol, 187(3):1374-1386. PubMed | DOI

Martinetto Y, Basset S, Pégot B, Roch-Marchal C, Camerel F, Jeftic J, Cottyn B, Magnier E, Floquet S (2021). Synthesis, Physical Properties and Application of a Series of New Polyoxometalate-Based Ionic Liquids. Molecules, 26(2):496. PubMed | DOI

Reyt G, Ramakrishna P, Salas-González I, Fujita S, Love A, Tiemessen D, Lapierre C, Morreel K, Calvo-Polanco M, Flis P, Geldner N, Boursiac Y, Boerjan W, George MW, Castrillo G, Salt DE (2021). Two chemically distinct root lignin barriers control solute and water balance. Nat Commun, 12(1):2320. PubMed | DOI

Martinetto Y, Pégot B, Roch-Marchal C, Haouas M, Cottyn B, Camerel F, Jeftic J, Morineau D, Magnier E, Floquet S (2021). A decatungstate-based ionic liquid exhibiting a very low dielectric constant suitable for acting as a solvent and a catalyst for the oxidation of organic substrates. New J Chem, 45: 9751-9755. DOI

Garajová S, Patel I, Lomascolo A, Legée F, Cézard L, Cottyn B, Lecourt M, Bertrand E, Sciara G, Tapin-Lingua S, Baumberger S, Faulds CB, Record E (2021). Treatment of wood fibres with laccases: improved hardboard properties through phenolic oligomerization. Eur J Wood Wood Prod, 79, pages 1369–1382. DOI

Rivière GN, Pion F, Farooq M, Sipponen MH, Koivula H, Jayabalan T, Pandard P, Marlair G, Liao X, Baumberger S, Österberg M (2021). Toward waste valorization by converting bioethanol production residues into nanoparticles and nanocomposite films. Sustain Mat Technol, 28. DOI

Lopez C, Novales B, Rabesona H, Weber M, Chardot T, Anton M (2021). Deciphering the properties of hemp seed oil bodies for food applications: Lipid composition, microstructure, surface properties and physical stability. Food Res Int, 150(Pt A):110759. PubMed | DOI

Nisler J, Kopecný D, Pekná Z, Koncitíková R, Koprna R, Murvanidze N, Werbrouck SPO, Havlícek L, De Diego N, Kopecná M, Wimmer Z, Briozzo P, Moréra S, Zalabák D, Spíchal L, Strnad M (2021). Diphenylurea-derived cytokinin oxidase/dehydrogenase inhibitors for biotechnology and agriculture. J Exp Bot, 72(2):355-370. PubMed | DOI

Berger A, Ralet MC, Akary E, Sallé C, Grandjean O, Debeaujon I, North HM (2021). Sterol Glucosyltransferases Tailor Polysaccharide Accumulation in Arabidopsis Seed Coat Epidermal Cells. Cells, 10(10):2546. PubMed | DOI

Cambert M, Berger A, Sallé C, Esling S, Charif D, Cadoret T, Ralet MC, North HM, Rondeau-Mouro C (2021). Datasets of seed mucilage traits for Arabidopsis thaliana natural accessions with atypical outer mucilage. Sci Data, 8(1):79. PubMed | DOI

Fabrissin I, Sano N, Seo M, North HM (2021). Ageing beautifully: can the benefits of seed priming be separated from a reduced lifespan trade-off?. J Exp Bot, 72(7):2312-2333. PubMed | DOI

Saez-Aguayo S, Parra-Rojas JP, Sepúlveda-Orellana P, Celiz-Balboa J, Arenas-Morales V, Sallé C, Salinas-Grenet H, Largo-Gosens A, North HM, Ralet MC, Orellana A (2021). Transport of UDP-rhamnose by URGT2, URGT4, and URGT6 modulates rhamnogalacturonan-I length. Plant Physiol, 185(3):914-933. PubMed | DOI

Sano N, Marion-Poll A (2021). ABA Metabolism and Homeostasis in Seed Dormancy and Germination. Int J Mol Sci, 22(10):5069. PubMed | DOI

Vergès V, Dutilleul C, Godin B, Collet B, Lécureuil A, Rajjou L, Guimaraes C, Pinault M, Chevalier S, Giglioli-Guivarc'h N, Ducos E (2021). Protein Farnesylation Takes Part in Arabidopsis Seed Development. Front Plant Sci, 12:620325. PubMed | DOI

Yuste-Lisbona FJ, Jiménez-Gómez JM, Capel C, Lozano R (2021). Effective Mapping by Sequencing to Isolate Causal Mutations in the Tomato Genome. Methods Mol Biol, 2264:89-103. PubMed | DOI

Gomez RE, Lupette J, Chambaud C, Castets J, Ducloy A, Cacas JL, Masclaux-Daubresse C, Bernard A (2021). How Lipids Contribute to Autophagosome Biogenesis, a Critical Process in Plant Responses to Stresses. Cells, 10(6):1272. PubMed | DOI

Sakai K, Citerne S, Antelme S, Le Bris P, Daniel S, Bouder A, D'Orlando A, Cartwright A, Tellier F, Pateyron S, Delannoy E, Laudencia-Chingcuanco D, Mouille G, Palauqui JC, Vogel J, Sibout R (2021). BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon. BMC Plant Biol, 21(1):196. PubMed | DOI

Corso M, An X, Jones CY, Gonzalez-Doblas V, Schvartzman MS, Malkowski E, Willats WGT, Hanikenne M, Verbruggen N (2021). Adaptation of Arabidopsis halleri to extreme metal pollution through limited metal accumulation involves changes in cell wall composition and metal homeostasis. New Phytol, 230(2):669-682. PubMed | DOI

Jacob P, Brisou G, Dalmais M, Thévenin J, Van der Wal F, Latrasse D, Suresh Devani R, Benhamed M, Dubreucq B, Boualem A, Lepiniec L, Immink RGH, Hirt H, Bendahmane A (2021). The Seed Development Factors TT2 and MYB5 Regulate Heat Stress Response in Arabidopsis. Genes, 12(5):746. PubMed | DOI

Kazaz S, Miray R, Baud S (2021). Acyl-Acyl Carrier Protein Desaturases and Plant Biotic Interactions. Cells, 10(3):674. PubMed | DOI

Lu J, Le Hir R, Gómez-Páez DM, Coen O, Péchoux C, Jasinski S, Magnani E (2021). The nucellus: between cell elimination and sugar transport. Plant Physiol, 185(2):478-490. PubMed | DOI

Miray R, Kazaz S, To A, Baud S (2021). Molecular Control of Oil Metabolism in the Endosperm of Seeds. Int J Mol Sci, 22(4):1621. PubMed | DOI

Salaün C, Lepiniec L, Dubreucq B (2021). Genetic and Molecular Control of Somatic Embryogenesis. Plants, 10(7):1467. PubMed | DOI

Zarattini M, Corso M, Kadowaki MA, Monclaro A, Magri S, Milanese I, Jolivet S, De Godoy MO, Hermans C, Fagard M, Cannella D (2021). LPMO-oxidized cellulose oligosaccharides evoke immunity in Arabidopsis conferring resistance towards necrotrophic fungus B. cinerea. Commun Biol, 4(1):727. PubMed | DOI

Jusselme MD, Cézard L, Pion F, Baumberger S, Robert A, Lapierre C, Diouf M, Mora P, Miambi E (2020). Changes in the Phenolic Fraction of Protobind 1000 and Bacterial Microbiota in the Gut of a Higher Termite, Nasutitermes Ephratae. J Microbiol Biotechnol, 5:3. DOI

Vachon J, Assad-Alkhateb D, Baumberger S, van Haveren J, Gosselink RJA, Monedero M, Bermudez JM (2020). Use of lignin as additive in polyethylene for food protection: Insect repelling effect of an ethyl acetate phenolic extract. Composites Part C, 2: 100044. DOI

Parry G, Provart NJ, Brady SM, Uzilday B, [...], Rajjou L, Lepiniec L, Multinational Arabidopsis Steering Committee (2020). White Paper: Current status of the multinational Arabidopsis community. Plant Direct, 4(7):e00248. PubMed | DOI

Ben Ali W, Navarro D, Kumar A, Drula E, Turbé-Doan A, Correia LO, Baumberger S, Bertrand E, Faulds CB, Henrissat B, Sciara G, Mechichi T, Record E (2020). Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions. Mar Drugs, 18(9):461. PubMed | DOI

Eugene A, Lapierre C, Ralph J (2020). Improved analysis of arabinoxylan-bound hydroxycinnamate conjugates in grass cell walls. Biotechnol Biofuels, 13(1):202. PubMed | DOI

Gerbin E, Frapart YM, Marcuello C, Cottyn B, Foulon L, Pernes M, Crônier D, Molinari M, Chabbert B, Ducrot PH, Baumberger S, Aguié-Béghin V, Kurek B (2020). Dual Antioxidant Properties and Organic Radical Stabilization in Cellulose Nanocomposite Films Functionalized by In Situ Polymerization of Coniferyl Alcohol. Biomacromolecules, 21(8):3163-3175. PubMed | DOI

Holt CA, Cottyn B, Baumberger S, Kovacs-Schreiner K, Blacker AJ (2020). High-Throughput Analysis of Lignin by Agarose Gel Electrophoresis. J Agric Food Chem, 68(48):14297-14306. PubMed | DOI

Vo LTT, Girones J, Jacquemot MP, Legée F, Cézard L, Lapierre C, El Hage F, Méchin V, Reymond M, Navard P (2020). Correlations between genotype biochemical characteristics and mechanical properties of maize stem - polyethylene composites. Ind Crops Prod, 143: 111925. DOI

Martinetto Y, Pégot B, Roch-Marchal C, Cottyn B, Floquet S (2020). Designing Functional Polyoxometalate-Based Ionic Liquid Crystals and Ionic Liquids. Eur J Inorg Chem, 3: 228-247. DOI

Jamme F, Cinquin B, Gohon Y, Pereiro E, Refregiers M, Froissard M (2020). Synchrotron multimodal imaging in a whole cell reveals lipid droplet core organization. J Synchrotron Radiat, 27:772-778. PubMed | DOI

Masclaux-Daubresse C, D'Andrea S, Bouchez I, Cacas JL (2020). Reserve lipids and plant autophagy. J Exp Bot, 71:2854-2861. PubMed | DOI

Chardon F, Cueff G, Delannoy E, Aube F, Lornac A, Bedu M, Gilard F, Pateyron S, Rogniaux H, Gargaros A, Mireau H, Rajjou L, Martin-Magniette ML, Budar F (2020). The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis. Plants, 9:. PubMed | DOI

Perreau F, Frey A, Effroy-Cuzzi D, Savane P, Berger A, Gissot L, Marion-Poll A (2020). ABSCISIC ACID-DEFICIENT4 Has an Essential Function in Both cis-Violaxanthin and cis-Neoxanthin Synthesis. Plant Physiol, 184(3):1303-1316. PubMed | DOI