Research departments

Biomass, Seeds and Bioproducts

BSB 5 research teams

IJPB publications (2006-to date)
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Fabrissin I, Cueff G, Berger A, Granier F, Sallé C, Poulain D, Ralet MC, North HM (2019). Natural Variation Reveals a Key Role for Rhamnogalacturonan I in Seed Outer Mucilage and Underlying Genes. Plant Physiol, 181:1498-1518. PubMed | DOI
Have M, Luo J, Tellier F, Balliau T, Cueff G, Chardon F, Zivy M, Rajjou L, Cacas JL, Masclaux-Daubresse C (2019). Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in endoplasmic reticulum and peroxisome metabolisms and in lipid composition. New Phytol, 223:1461-1477. PubMed | DOI
Liu B, Honnorat B, Yang H, Arancibia J, Rajjou L, Rousseau A (2019). Non-thermal DBD plasma array on seed germination of different plant species. J Phys D: Appl Phys, 52:025401. DOI
Nagel M, Alqudah AM, Bailly M, Rajjou L, Pistrick S, Matzig G, Borner A, Kranner I (2019). Novel loci and a role for nitric oxide for seed dormancy and preharvest sprouting in barley. Plant Cell Environ, 42:1318-1327. PubMed | DOI
Poulain D, Botran L, North HM, Ralet MC (2019). Composition and physicochemical properties of outer mucilage from seeds of Arabidopsis natural accessions. AoB Plants, 11:plz031. PubMed | DOI
Sano N, Takebayashi Y, To A, Mhiri C, Rajjou L, Nakagami H, Kanekatsu M (2019). Shotgun proteomic analysis highlights roles of long-lived mRNAs and de novo transcribed mRNAs upon imbibition in rice embryos. Plant Cell Physiol, . PubMed | DOI
Yazdanpanah F, Maurino VG, Mettler-Altmann T, Buijs G, Bailly MN, Karimi Jashni M, Willems L, Sergeeva LI, Rajjou LC, Hilhorst HWM, Bentsink LN (2019). NADP-MALIC ENZYME 1 Affects Germination after Seed Storage in Arabidopsis thaliana. Plant Cell Physiol, 60:318-328. PubMed | DOI
Fantini E, Sulli M, Zhang L, Aprea G, Jiménez-Gómez JM, Bendahmane A, Perrotta G, Giuliano G, Facella P (2019). Pivotal Roles of Cryptochromes 1a and 2 in Tomato Development and Physiology. Plant Physiol, 179:732-748. PubMed | DOI
Huertas R, Catala R, Jiménez-Gómez JM, Mar Castellano M, Crevillen P, Pineiro M, Jarillo JA, Salinas J (2019). Arabidopsis SME1 Regulates Plant Development and Response to Abiotic Stress by Determining Spliceosome Activity Specificity. Plant Cell, 31:537-554. PubMed | DOI
Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB (2019). Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat Plants, 5:471-479. PubMed | DOI
Martiniere A, Fiche JB, Smokvarska M, Mari S, Alcon C, Dumont X, Hématy K, Jaillais Y, Nollmann M, Maurel C (2019). Osmotic Stress Activates Two Reactive Oxygen Species Pathways with Distinct Effects on Protein Nanodomains and Diffusion. Plant Physiol, 179:1581-1593. PubMed | DOI
Moukhtar J, Trubuil A, Belcram K, Legland D, Khadir Z, Urbain A, Palauqui JC, Andrey P (2019). Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. PLoS Comput Biol, 15:e1006771. PubMed | DOI
Sakai K, Charlot F, Le Saux T, Bonhomme S, Nogué F, Palauqui JC, Fattaccioli J (2019). Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology. Plant Methods, 15:79. PubMed | DOI
Trinh DC, Lavenus J, Goh T, Boutte Y, Drogue Q, Vaissayre V, Tellier F, Lucas M, Voss U, Gantet P, Faure JD, Dussert S, Fukaki H, Bennett MJ, Laplaze L, Guyomarc'h S (2019). PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation. Proc Natl Acad Sci U S A, 116:14325-14330. PubMed | DOI
Coen O, Lu J, Xu W, De Vos D, Péchoux C, Domergue F, Grain D, Lepiniec L, Magnani E (2019). Deposition of a cutin apoplastic barrier separating seed maternal and zygotic tissues. BMC Plant Biol, 19:304. PubMed | DOI
Roscoe TJ, Vaissayre V, Paszkiewicz G, Clavijo F, Kelemen Z, Michaud C, Lepiniec LC, Dubreucq B, Zhou DX, Devic M (2019). Regulation of FUSCA3 Expression During Seed Development in Arabidopsis. Plant Cell Physiol, 60:476-487. PubMed | DOI
Chateigner-Boutin AL, Lapierre C, Alvarado C, Yoshinaga A, Barron C, Bouchet B, Bakan B, Saulnier L, Devaux MF, Girousse C, Guillon F (2018). Ferulate and lignin cross-links increase in cell walls of wheat grain outer layers during late development. Plant Sci, 276:199-207. PubMed | DOI
Have M, Balliau T, Cottyn B, Derond E, Cueff G, Soulay F, Lornac A, Reichman P, Dissmeyer N, Avice JC, Gallois P, Rajjou L, Zivy M, Masclaux-Daubresse C (2018). Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?. J Exp Bot, 69:1369-1385. PubMed | DOI
Lapierre C, Voxeur A, Karlen SD, Helm RF, Ralph J (2018). Evaluation of Feruloylated and p-Coumaroylated Arabinosyl Units in Grass Arabinoxylans by Acidolysis in Dioxane/Methanol. J Agric Food Chem, 66:5418-5424. PubMed | DOI
Rashid GMM, Zhang X, Wilkinson RC, Fulop V, Cottyn B, Baumberger S, Bugg TDH (2018). Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical. ACS Chem Biol, 13:2920-2929. PubMed | DOI
Thierry M, Majira A, Pégot B, Cézard L, Bourdreux F, Clément G, Perreau F, Boutet S, Diter P, Vo-Thanh G, Lapierre C, Ducrot PH, Magnier E, Baumberger S, Cottyn B (2018). Imidazolium-Based Ionic Liquids as Efficient Reagents for the C-O Bond Cleavage of Lignin. ChemSusChem, 11:439-448. PubMed | DOI
Ayme L, Arragain S, Canonge M, Baud S, Touati N, Bimai O, Jagic F, Louis-Mondésir C, Briozzo P, Fontecave M, Chardot T (2018). Arabidopsis thaliana DGAT3 is a [2Fe-2S] protein involved in TAG biosynthesis. Sci Rep, 8:17254. PubMed | DOI
Deruyffelaere C, Purkrtova Z, Bouchez I, Collet B, Cacas JL, Chardot T, Gallois JL, D'Andrea S (2018). PUX10 Is a CDC48A Adaptor Protein That Regulates the Extraction of Ubiquitinated Oleosins from Seed Lipid Droplets in Arabidopsis. Plant Cell, 30:2116-2136. PubMed | DOI
Rigouin C, Croux C, Borsenberger V, Ben Khaled M, Chardot T, Marty A, Bordes F (2018). Increasing medium chain fatty acids production in Yarrowia lipolytica by metabolic engineering. Microb Cell Fact, 17:142. PubMed | DOI
Sossna-Wunder G, Hengstenberg W, Briozzo P, Deutscher J (2018). Photoinactivation of the Staphylococcus aureus Lactose-Specific EIICB Phosphotransferase Component with p-azidophenyl-beta-D-Galactoside and Phosphorylation of the Covalently Bound Substrate. J Mol Microbiol Biotechnol, 28:147-158. PubMed | DOI
Francoz E, Lepiniec L, North HM (2018). Seed coats as an alternative molecular factory: thinking outside the box. Plant Reprod, 31:327-342. PubMed | DOI
Ingram G, North HM, Lepiniec L (2018). Seeds as perfect factories for developing sustainable agriculture. Plant Reprod, 31:201-202. PubMed | DOI
Séchet J, Marion-Poll A, North HM (2018). Emerging Functions for Cell Wall Polysaccharides Accumulated during Eudicot Seed Development. Plants, 7:. PubMed | DOI
Xia Q, Ponnaiah M, Cueff G, Rajjou L, Prodhomme D, Gibon Y, Bailly C, Corbineau F, Meimoun P, El-Maarouf-Bouteau H (2018). Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination. Plant Sci, 269:118-125. PubMed | DOI
Albert E, Duboscq R, Latreille M, Santoni S, Beukers M, Bouchet JP, Bitton F, Gricourt J, Poncet C, Gautier V, Jiménez-Gómez JM, Rigaill G, Causse M (2018). Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato. Plant J, 96:635-650. PubMed | DOI
Ashoub A, Muller N, Jiménez-Gómez JM, Bruggemann W (2018). Prominent alterations of wild barley leaf transcriptome in response to individual and combined drought acclimation and heat shock conditions. Physiol Plant, 163:18-29. PubMed | DOI
Muller NA, Zhang L, Koornneef M, Jiménez-Gómez JM (2018). Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proc Natl Acad Sci U S A, 115:7135-7140. PubMed | DOI
Olate E, Jiménez-Gómez JM, Holuigue L, Salinas J (2018). NPR1 mediates a novel regulatory pathway in cold acclimation by interacting with HSFA1 factors. Nat Plants, 4:811-823. PubMed | DOI
Faure JD, Napier JA (2018). Europe's first and last field trial of gene-edited plants?. Elife, 7:e42379. PubMed | DOI
Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin-Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B (2018). Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo. Plant Methods, 14:10. PubMed | DOI
Zhang R, Chouket R, Plamont MA, Kelemen Z, Espagne A, Tebo AG, Gautier A, Gissot L, Faure JD, Jullien L, Croquette V, Le Saux T (2018). Macroscale fluorescence imaging against autofluorescence under ambient light. Light Sci Appl, 7:97. PubMed | DOI
Baud S (2018). Seeds as oil factories. Plant Reprod, 31:213-235. PubMed | DOI
Boulard C, Thévenin J, Tranquet O, Laporte V, Lepiniec L, Dubreucq B (2018). LEC1 (NF-YB9) directly interacts with LEC2 to control gene expression in seed. Biochim Biophys Acta Gene Regul Mech, 1861:443-450. PubMed | DOI
Coen O, Magnani E (2018). Seed coat thickness in the evolution of angiosperms. Cell Mol Life Sci, 75:2509-2518. PubMed | DOI
Ettaki H, Troncoso-Ponce MA, To A, Barthole G, Lepiniec L, Baud S (2018). Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents. PLoS One, 13:e0192156. PubMed | DOI
Lepiniec L, Devic M, Roscoe TJ, Bouyer D, Zhou DX, Boulard C, Baud S, Dubreucq B (2018). Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development. Plant Reprod, 31:291-307. PubMed | DOI
Lu J, Magnani E (2018). Seed tissue and nutrient partitioning, a case for the nucellus. Plant Reprod, 31:309-317. PubMed | DOI
Magnani E (2018). Seed Evolution, A 'Simpler' Story. Trends Plant Sci, 23:654-656. PubMed | DOI
Troncoso-Ponce MA, Rivoal J, Dorion S, Sanchez R, Venegas-Caleron M, Moreno-Perez AJ, Baud S, Garces R, Martinez-Force E (2018). Molecular and biochemical characterization of the sunflower (Helianthus annuus L.) cytosolic and plastidial enolases in relation to seed development. Plant Sci, 272:117-130. PubMed | DOI
Chupin L, Arnoult S, Brancourt-Hulmel M, Lapierre C, Gineau E, Navard P (2017). Polyethylene composites made from below-ground miscanthus biomass. Industrial Crops and Products, 109:523-528. PubMed | DOI
Chupin L, Ridder D, Clément-Vidal A, Soutiras A, Gineau E, Mouille G, Arnoult S, Brancourt-Hulmel M, Lapierre C, Pot D, Vincent L, Mija A, Navard P (2017). Influence of the radial stem composition on the thermal behaviour of miscanthus and sorghum genotypes. Carbohydr Polym, 167:12-19. PubMed | DOI
Horbury MD, Quan WD, Flourat AL, Allais F, Stavros VG (2017). Elucidating nuclear motions in a plant sunscreen during photoisomerization through solvent viscosity effects. Phys Chem Chem Phys, 19:21127-21131. PubMed | DOI
Janvier M, Ducrot PH, Allais F (2017). Isocyanate-Free Synthesis and Characterization of Renewable Poly(hydroxy)urethanes from Syringaresinol. ACS Sustainable Chemistry & Engineering, 5:8648-8656. PubMed | DOI
Janvier M, Hollande L, Jaufurally AS, Pernes M, Menard R, Grimaldi M, Beaugrand J, Balaguer P, Ducrot PH, Allais F (2017). Syringaresinol: A Renewable and Safer Alternative to Bisphenol A for Epoxy-Amine Resins. ChemSusChem, 10:738-746. PubMed | DOI
Luo J, Liu Y, Yang S, Flourat AL, Allais F, Han K (2017). Ultrafast Barrierless Photoisomerization and Strong Ultraviolet Absorption of Photoproducts in Plant Sunscreens. J Phys Chem Lett, 8:1025-1030. PubMed | DOI
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