Biomass, Seeds and Bioproducts

Sano N, Rajjou L, North HM (2020). Lost in Translation: Physiological Roles of Stored mRNAs in Seed Germination. Plants, 9:. PubMed | DOI

Verly C, Djoman ACR, Rigault M, Giraud F, Rajjou L, Saint-Macary ME, Dellagi A (2020). Plant Defense Stimulator Mediated Defense Activation Is Affected by Nitrate Fertilization and Developmental Stage in Arabidopsis thaliana. Front Plant Sci, 11:583. PubMed | DOI

Williams MaK, Cornuault V, Irani AH, Symonds VV, Malmstrom J, An Y, Sims IM, Carnachan SM, Sallé C, North HM (2020). Polysaccharide Structures in the Outer Mucilage of Arabidopsis Seeds Visualized by AFM. Biomacromolecules, 21:1450-1459. PubMed | DOI

Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez-Gómez JM, Colot V, Quadrana L (2020). The impact of transposable elements on tomato diversity. Nat Commun, 11(1):4058. PubMed | DOI

Hu Y, Mesihovic A, Jiménez-Gómez JM, Roth S, Gebhardt P, Bublak D, Bovy A, Scharf KD, Schleiff E, Fragkostefanakis S (2020). Natural variation in HsfA2 pre-mRNA splicing is associated with changes in thermotolerance during tomato domestication. New Phytol, 225:1297-1310. PubMed | DOI

Van Dooren TJM, Silveira AB, Gilbault E, Jiménez-Gómez JM, Martin A, Bach L, Tisne S, Quadrana L, Loudet O, Colot V (2020). Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects. J Exp Bot, 71:3588-3602. PubMed | DOI

Xiang Y, Jiménez-Gómez JM (2020). SlHAK20: a new player in plant salt tolerance. EMBO J, 39(10):e104997. PubMed | DOI

Yuste-Lisbona FJ, Fernandez-Lozano A, Pineda B, Bretones S, Ortiz-Atienza A, Garcia-Sogo B, Muller NA, Angosto T, Capel J, Moreno V, Jiménez-Gómez JM, Lozano R (2020). ENO regulates tomato fruit size through the floral meristem development network. Proc Natl Acad Sci U S A, 117:8187-8195. PubMed | DOI

Zhang L, Jiménez-Gómez JM (2020). Functional analysis of FRIGIDA using naturally occurring variation in Arabidopsis thaliana. Plant J, 103:154-165. PubMed | DOI

Bruggeman Q, Piron-Prunier F, Tellier F, Faure JD, Latrasse D, Manza-Mianza D, Mazubert C, Citerne S, Boutet S, Lugan R, Bergounioux C, Raynaud C, Benhamed M, Delarue M (2020). Involvement of Arabidopsis BIG protein in cell death mediated by Myo-inositol homeostasis. Sci Rep, 10(1):11268. PubMed | DOI

Hermier D, Lan A, Tellier F, Blais A, Culetto MG, Mathe V, Bellec Y, Gissot L, Schmidely P, Faure JD (2020). Intestinal Availability and Metabolic Effects of Dietary Camelina Sphingolipids during the Metabolic Syndrome Onset in Mice. J Agric Food Chem, 68:788-798. PubMed | DOI

Kelemen Z, Zhang R, Gissot L, Chouket R, Bellec Y, Croquette V, Jullien L, Faure JD, Le Saux T (2020). Dynamic Contrast for Plant Phenotyping. ACS Omega, 5(25):15105-15114. PubMed | DOI

Corso M, Garcia De La Torre VS (2020). Biomolecular approaches to understanding metal tolerance and hyperaccumulation in plants. Metallomics, 12:840-859. PubMed | DOI

Corso M, Perreau F, Mouille G, Lepiniec L (2020). Specialized phenolic compounds in seeds: structures, functions, and regulations. Plant Sci, 296:110471. PubMed | DOI

Kazaz S, Barthole G, Domergue F, Ettaki H, To A, Vasselon D, De Vos D, Belcram K, Lepiniec L, Baud S (2020). Differential Activation of Partially Redundant ∆9 Stearoyl-ACP Desaturase Genes Is Critical for Omega-9 Monounsaturated Fatty Acid Biosynthesis During Seed Development in Arabidopsis. Plant Cell, 32(11):3613-3637. PubMed | DOI

To A, Joubes J, Thueux J, Kazaz S, Lepiniec L, Baud S (2020). AtMYB92 enhances fatty acid synthesis and suberin deposition in leaves of Nicotiana benthamiana. Plant J, . PubMed | DOI

Ye Y, Nikovics K, To A, Lepiniec L, Fedosejevs ET, Van Doren SR, Baud S, Thelen JJ (2020). Docking of acetyl-CoA carboxylase to the plastid envelope membrane attenuates fatty acid production in plants. Nat Commun, 11(1):6191. PubMed | DOI

Hochegger M, Trimmel G, Cottyn B, Cézard L, Majira A, Schober S, Mittelbach M (2019). Influence of Base-Catalyzed Organosolv Fractionation of Larch Wood Sawdust on Fraction Yields and Lignin Properties. Catalysts, 9(12): 996. DOI

Daly P, Mcclellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C (2019). RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnol J, 17:594-607. PubMed | DOI

Hochegger M, Cottyn B, Cézard L, Schober S, Mittelbach M (2019). Influence of Ethanol Organosolv Pulping Conditions on Physicochemical Lignin Properties of European Larch. International Journal of Chemical Engineering, 2019:1-10. PubMed | DOI

Lapierre C, Voxeur A, Boutet S, Ralph J (2019). Arabinose Conjugates Diagnostic of Ferulate-Ferulate and Ferulate-Monolignol Cross-Coupling Are Released by Mild Acidolysis of Grass Cell Walls. J Agric Food Chem, 67:12962-12971. PubMed | DOI

Le Bris P, Wang Y, Barbereau C, Antelme S, Cézard L, Legée F, D'Orlando A, Dalmais M, Bendahmane A, Schuetz M, Samuels L, Lapierre C, Sibout R (2019). Inactivation of LACCASE8 and LACCASE5 genes in Brachypodium distachyon leads to severe decrease in lignin content and high increase in saccharification yield without impacting plant integrity. Biotechnol Biofuels, 12:181. PubMed | DOI

Majira A, Godon B, Foulon L, Van Der Putten JC, Cézard L, Thierry M, Pion F, Bado-Nilles A, Pandard P, Jayabalan T, Aguié-Béghin V, Ducrot PH, Lapierre C, Marlair G, Gosselink RJA, Baumberger S, Cottyn B (2019). Enhancing the Antioxidant Activity of Technical Lignins by Combining Solvent Fractionation and Ionic-Liquid Treatment. ChemSusChem, . PubMed | DOI

Ralph J, Lapierre C, Boerjan W (2019). Lignin structure and its engineering. Curr Opin Biotechnol, 56:240-249. PubMed | DOI

Machover D, Rossi L, Hamelin J, Desterke C, Goldschmidt E, Chadefaux-Vekemans B, Bonnarme P, Briozzo P, Kopecný D, Pierige F, Magnani M, Mollicone R, Haghighi-Rad F, Gaston-Mathe Y, Dairou J, Boucheix C, Saffroy R (2019). Effects in Cancer Cells of the Recombinant l-Methionine Gamma-Lyase from Brevibacterium aurantiacum. Encapsulation in Human Erythrocytes for Sustained l-Methionine Elimination. J Pharmacol Exp Ther, 369:489-502. PubMed | DOI

Miller C, Wells R, Mckenzie N, Trick M, Ball J, Fatihi A, Dubreucq B, Chardot T, Lepiniec L, Bevan MW (2019). Variation in expression of the HECT E3 ligase UPL3 modulates LEC2 levels, seed size and crop yield in Brassica napus. Plant Cell, D1419tpc.00577.02018:. PubMed | DOI

Rethore E, D'Andrea S, Benamar A, Cukier C, Tolleter D, Limami AM, Avelange-Macherel MH, Macherel D (2019). Arabidopsis seedlings display a remarkable resilience under severe mineral starvation using their metabolic plasticity to remain self-sufficient for weeks. Plant J, 99:302-315. PubMed | DOI

Boussardon C, Martin-Magniette ML, Godin B, Benamar A, Vittrant B, Citerne S, Mary-Huard T, Macherel D, Rajjou L, Budar F (2019). Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor. Front Plant Sci, 10:32. PubMed | DOI

Chauffour F, Bailly M, Perreau F, Cueff G, Suzuki H, Collet B, Frey A, Clément G, Soubigou-Taconnat L, Balliau T, Krieger-Liszkay A, Rajjou L, Marion-Poll A (2019). Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. Plant Physiol, 180:1198-1218. PubMed | DOI

Durand TC, Cueff G, Godin B, Valot B, Clément G, Gaude T, Rajjou L (2019). Combined Proteomic and Metabolomic Profiling of the Arabidopsis thaliana vps29 Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development. Int J Mol Sci, 20:362. PubMed | DOI

Fabrissin I, Cueff G, Berger A, Granier F, Sallé C, Poulain D, Ralet MC, North HM (2019). Natural Variation Reveals a Key Role for Rhamnogalacturonan I in Seed Outer Mucilage and Underlying Genes. Plant Physiol, 181:1498-1518. PubMed | DOI

Have M, Luo J, Tellier F, Balliau T, Cueff G, Chardon F, Zivy M, Rajjou L, Cacas JL, Masclaux-Daubresse C (2019). Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in endoplasmic reticulum and peroxisome metabolisms and in lipid composition. New Phytol, 223:1461-1477. PubMed | DOI

Liu B, Honnorat B, Yang H, Arancibia J, Rajjou L, Rousseau A (2019). Non-thermal DBD plasma array on seed germination of different plant species. J Phys D: Appl Phys, 52:025401. DOI

Nagel M, Alqudah AM, Bailly M, Rajjou L, Pistrick S, Matzig G, Borner A, Kranner I (2019). Novel loci and a role for nitric oxide for seed dormancy and preharvest sprouting in barley. Plant Cell Environ, 42:1318-1327. PubMed | DOI

Poulain D, Botran L, North HM, Ralet MC (2019). Composition and physicochemical properties of outer mucilage from seeds of Arabidopsis natural accessions. AoB Plants, 11:plz031. PubMed | DOI

Sano N, Takebayashi Y, To A, Mhiri C, Rajjou L, Nakagami H, Kanekatsu M (2019). Shotgun proteomic analysis highlights roles of long-lived mRNAs and de novo transcribed mRNAs upon imbibition in rice embryos. Plant Cell Physiol, . PubMed | DOI

Yazdanpanah F, Maurino VG, Mettler-Altmann T, Buijs G, Bailly MN, Karimi Jashni M, Willems L, Sergeeva LI, Rajjou LC, Hilhorst HWM, Bentsink LN (2019). NADP-MALIC ENZYME 1 Affects Germination after Seed Storage in Arabidopsis thaliana. Plant Cell Physiol, 60:318-328. PubMed | DOI

Fantini E, Sulli M, Zhang L, Aprea G, Jiménez-Gómez JM, Bendahmane A, Perrotta G, Giuliano G, Facella P (2019). Pivotal Roles of Cryptochromes 1a and 2 in Tomato Development and Physiology. Plant Physiol, 179:732-748. PubMed | DOI

Huertas R, Catala R, Jiménez-Gómez JM, Mar Castellano M, Crevillen P, Pineiro M, Jarillo JA, Salinas J (2019). Arabidopsis SME1 Regulates Plant Development and Response to Abiotic Stress by Determining Spliceosome Activity Specificity. Plant Cell, 31:537-554. PubMed | DOI

Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB (2019). Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat Plants, 5:471-479. PubMed | DOI

Martiniere A, Fiche JB, Smokvarska M, Mari S, Alcon C, Dumont X, Hématy K, Jaillais Y, Nollmann M, Maurel C (2019). Osmotic Stress Activates Two Reactive Oxygen Species Pathways with Distinct Effects on Protein Nanodomains and Diffusion. Plant Physiol, 179:1581-1593. PubMed | DOI

Moukhtar J, Trubuil A, Belcram K, Legland D, Khadir Z, Urbain A, Palauqui JC, Andrey P (2019). Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. PLoS Comput Biol, 15:e1006771. PubMed | DOI

Sakai K, Charlot F, Le Saux T, Bonhomme S, Nogué F, Palauqui JC, Fattaccioli J (2019). Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology. Plant Methods, 15:79. PubMed | DOI

Trinh DC, Lavenus J, Goh T, Boutte Y, Drogue Q, Vaissayre V, Tellier F, Lucas M, Voss U, Gantet P, Faure JD, Dussert S, Fukaki H, Bennett MJ, Laplaze L, Guyomarc'h S (2019). PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation. Proc Natl Acad Sci U S A, 116:14325-14330. PubMed | DOI

Coen O, Lu J, Xu W, De Vos D, Péchoux C, Domergue F, Grain D, Lepiniec L, Magnani E (2019). Deposition of a cutin apoplastic barrier separating seed maternal and zygotic tissues. BMC Plant Biol, 19:304. PubMed | DOI

Roscoe TJ, Vaissayre V, Paszkiewicz G, Clavijo F, Kelemen Z, Michaud C, Lepiniec LC, Dubreucq B, Zhou DX, Devic M (2019). Regulation of FUSCA3 Expression During Seed Development in Arabidopsis. Plant Cell Physiol, 60:476-487. PubMed | DOI

Chateigner-Boutin AL, Lapierre C, Alvarado C, Yoshinaga A, Barron C, Bouchet B, Bakan B, Saulnier L, Devaux MF, Girousse C, Guillon F (2018). Ferulate and lignin cross-links increase in cell walls of wheat grain outer layers during late development. Plant Sci, 276:199-207. PubMed | DOI

Have M, Balliau T, Cottyn B, Derond E, Cueff G, Soulay F, Lornac A, Reichman P, Dissmeyer N, Avice JC, Gallois P, Rajjou L, Zivy M, Masclaux-Daubresse C (2018). Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?. J Exp Bot, 69:1369-1385. PubMed | DOI

Lapierre C, Voxeur A, Karlen SD, Helm RF, Ralph J (2018). Evaluation of Feruloylated and p-Coumaroylated Arabinosyl Units in Grass Arabinoxylans by Acidolysis in Dioxane/Methanol. J Agric Food Chem, 66:5418-5424. PubMed | DOI

Rashid GMM, Zhang X, Wilkinson RC, Fulop V, Cottyn B, Baumberger S, Bugg TDH (2018). Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical. ACS Chem Biol, 13:2920-2929. PubMed | DOI