Biomass, Seeds and Bioproducts

Aguié-Béghin V, Foulon L, Soto P, Crônier D, Corti E, Legée F, Cézard L, Chabbert B, Maillard MN, Huijgen WJ, Baumberger S (2015). Use of food and packaging model matrices to investigate the antioxidant properties of biorefinery grass lignins. J Agric Food Chem, 63:10022-10031. PubMed | DOI

Barbara I, Flourat A, Allais F (2015). Renewable polymers derived from ferulic acid and biobased diols via ADMET. European Polymer Journal, 62:236-243. PubMed | DOI

Bensussan M, Lefebvre V, Ducamp A, Trouverie J, Gineau E, Fortabat MN, Guillebaux A, Baldy A, Naquin D, Herbette S, Lapierre C, Mouille G, Horlow C, Durand-Tardif M (2015). Suppression of Dwarf and irregular xylem Phenotypes Generates Low-Acetylated Biomass Lines in Arabidopsis. Plant Physiol, 168:452-463. PubMed | DOI

Burge G, Flourat A, Pollet B, Spinnler H, Allais F (2015). 3-Hydroxypropionaldehyde (3-HPA) quantification by HPLC using a synthetic acrolein-free 3-hydroxypropionaldehyde system as analytical standard. RSC Advances, 5:92619-92627. PubMed | DOI

Burge G, Saulou-Berion C, Moussa M, Pollet B, Flourat A, Allais F, Athes V, Spinnler HE (2015). Diversity of Lactobacillus reuteri Strains in Converting Glycerol into 3-Hydroxypropionic Acid. Appl Biochem Biotechnol, 177:923-939. PubMed | DOI

Cottyn B, Rivard M, Majira A, Beauhaire J, Allais F, Martens T, Baumberger S, Ducrot PH (2015). Comparative electrochemical study on monolignols and dimers relevant for the comprehension of the lignification process. Phytochemistry Letters, 13:280-285. PubMed | DOI

Dulermo T, Coze F, Virolle MJ, Méchin V, Baumberger S, Froissard M (2015). Bioconversion of agricultural lignocellulosic residues into branched-chain fatty acids usingStreptomyces lividans. Ocl, 23:A202. PubMed | DOI

Flourat AL, Peru AaM, Teixeira ARS, Brunissen F, Allais F (2015). Chemo-enzymatic synthesis of key intermediates (S)-?-hydroxymethyl-?,?-butenolide and (S)-?-hydroxymethyl-?-butyrolactone via lipase-mediated Baeyer–Villiger oxidation of levoglucosenone. Green Chemistry, 17:404-412. PubMed | DOI

Oulame M, Pion F, Allauddin S, Raju K, Ducrot P, Allais F (2015). Renewable alternating aliphatic-aromatic poly(ester-urethane)s prepared from ferulic acid and bio-based diols. European Polymer Journal, 63:186-193. PubMed | DOI

Wang Y, Bouchabké-Coussa O, Le Bris P, Antelme S, Soulhat C, Gineau E, Dalmais M, Bendahmane A, Morin H, Mouille G, Legée F, Cézard L, Lapierre C, Sibout R (2015). LACCASE5 is required for lignification of the Brachypodium distachyon Culm. Plant Physiol, 168:192-204. PubMed | DOI

Ayme L, Jolivet P, Nicaud JM, Chardot T (2015). Molecular Characterization of the Elaeis guineensis Medium-Chain Fatty Acid Diacylglycerol Acyltransferase DGAT1-1 by Heterologous Expression in Yarrowia lipolytica. PLoS One, 10:e0143113. PubMed | DOI

Bouchez I, Pouteaux M, Canonge M, Genet M, Chardot T, Guillot A, Froissard M (2015). Regulation of lipid droplet dynamics in Saccharomyces cerevisiae depends on the Rab7-like Ypt7p, HOPS complex and V1-ATPase. Biol Open, 4:764-775. PubMed | DOI

Boulard C, Bardet M, Chardot T, Dubreucq B, Gromova M, Guillermo A, Miquel M, Nesi N, Yen-Nicolay S, Jolivet P (2015). The structural organization of seed oil bodies could explain the contrasted oil extractability observed in two rapeseed genotypes. Planta, 242:53-68. PubMed | DOI

Deruyffelaere C, Bouchez I, Morin H, Guillot A, Miquel M, Froissard M, Chardot T, D'Andrea S (2015). Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Plant Cell Physiol, 56:1374-1387. PubMed | DOI

Froissard M, Canonge M, Pouteaux M, Cintrat B, Mohand-Oumoussa S, Guillouet SE, Chardot T, Jacques N, Casaregola S (2015). Lipids containing medium-chain fatty acids are specific to post-whole genome duplication Saccharomycotina yeasts. BMC Evol Biol, 15:97. PubMed | DOI

Mameri H, Brossard C, Gaudin JC, Gohon Y, Paty E, Beaudouin E, Moneret-Vautrin DA, Drouet M, Sole V, Wien F, Lupi R, Larre C, Snegaroff J, Denery-Papini S (2015). Structural Basis of IgE Binding to alpha- and gamma-Gliadins: Contribution of Disulfide Bonds and Repetitive and Nonrepetitive Domains. J Agric Food Chem, 63:6546-6554. PubMed | DOI

Purkrtova Z, Chardot T, Froissard M (2015). N-terminus of seed caleosins is essential for lipid droplet sorting but not for lipid accumulation. Arch Biochem Biophys, 579:47-54. PubMed | DOI

Bourcier De Carbon C, Thurotte A, Wilson A, Perreau F, Kirilovsky D (2015). Biosynthesis of soluble carotenoid holoproteins in Escherichia coli. Sci Rep, 5:9085. PubMed | DOI

Galland M, Rajjou L (2015). Regulation of mRNA translation controls seed germination and is critical for seedling vigor. Front Plant Sci, 6:284. PubMed | DOI

Leverenz RL, Sutter M, Wilson A, Gupta S, Thurotte A, Bourcier De Carbon C, Petzold CJ, Ralston C, Perreau F, Kirilovsky D, Kerfeld CA (2015). PHOTOSYNTHESIS. A 12 A carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection. Science, 348:1463-1466. PubMed | DOI

Nguyen TP, Cueff G, Hegedus DD, Rajjou L, Bentsink L (2015). A role for seed storage proteins in Arabidopsis seed longevity. J Exp Bot, 66:6399-6413. PubMed | DOI

Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, De Kochko A, Sarramegna-Burtet V, Job D (2015). The Amborella vacuolar processing enzyme family. Front Plant Sci, 6:618. PubMed | DOI

Séchet J, Roux C, Plessis A, Effroy D, Frey A, Perreau F, Biniek C, Krieger-Liszkay A, Macherel D, North HM, Mireau H, Marion-Poll A (2015). The ABA-deficiency suppressor locus HAS2 encodes the PPR protein LOI1/MEF11 involved in mitochondrial RNA editing. Mol Plant, 8:644-656. PubMed | DOI

Voiniciuc C, Schmidt MH, Berger A, Yang B, Ebert B, Scheller HV, North HM, Usadel B, Gunl M (2015). MUCILAGE-RELATED10 Produces Galactoglucomannan That Maintains Pectin and Cellulose Architecture in Arabidopsis Seed Mucilage. Plant Physiol, 169:403-420. PubMed | DOI

Anne P, Azzopardi M, Gissot L, Beaubiat S, Hématy K, Palauqui JC (2015). OCTOPUS Negatively Regulates BIN2 to Control Phloem Differentiation in Arabidopsis thaliana. Curr Biol, 25:2584-2590. PubMed | DOI

De Klein N, Magnani E, Banf M, Rhee SY (2015). microProtein Prediction Program (miP3): A Software for Predicting microProteins and Their Target Transcription Factors. Int J Genomics, 2015:734147. PubMed | DOI

Farace G, Visconti S, Marchive C, Aducci P, Marra M, Trossat-Magnin C (2015). Characterization, functional validation and gene expression patterns of two 14-3-3 isoforms from Vitis vinifera. Vitis, 54:33-40. PubMed | DOI

Grimault A, Gendrot G, Chaignon S, Gilard F, Tcherkez G, Thévenin J, Dubreucq B, Depege-Fargeix N, Rogowsky PM (2015). Role of B3 domain transcription factors of the AFL family in maize kernel filling. Plant Sci, 236:116-125. PubMed | DOI

Grimault A, Gendrot G, Chamot S, Widiez T, Rabille H, Gerentes MF, Creff A, Thévenin J, Dubreucq B, Ingram GC, Rogowsky PM, Depege-Fargeix N (2015). ZmZHOUPI, an endosperm-specific basic helix-loop-helix transcription factor involved in maize seed development. Plant J, 84:574-586. PubMed | DOI

Kelemen Z, Sebastian A, Xu W, Grain D, Salsac F, Avon A, Berger N, Tran J, Dubreucq B, Lurin C, Lepiniec L, Contreras-Moreira B, Dubos C (2015). Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One, 10:e0141044. PubMed | DOI

Miquel M, Trigui G, Trubuil A, Dubreucq B (2015). Imaging and quantitative analysis of size and distribution of sperical bodies, e.g. embryonic oil bodies. Bio-Protocole, 5:1-6. PubMed | DOI

Shen Y, Devic M, Lepiniec L, Zhou DX (2015). Chromodomain, Helicase and DNA-binding CHD1 protein, CHR5, are involved in establishing active chromatin state of seed maturation genes. Plant Biotechnol J, 13:811-820. PubMed | DOI

Thazar-Poulot N, Miquel M, Fobis-Loisy I, Gaude T (2015). Peroxisome extensions deliver the Arabidopsis SDP1 lipase to oil bodies. Proc Natl Acad Sci U S A, 112:4158-4163. PubMed | DOI

Xu W, Dubos C, Lepiniec L (2015). Transcriptional control of flavonoid biosynthesis by MYB-bHLH-WDR complexes. Trends Plant Sci, 20:176-185. PubMed | DOI

Chazal R, Robert P, Durand S, Devaux MF, Saulnier L, Lapierre C, Guillon F (2014). Investigating lignin key features in maize lignocelluloses using infrared spectroscopy. Appl Spectrosc, 68:1342-1347. PubMed | DOI

Marriott PE, Sibout R, Lapierre C, Fangel JU, Willats WG, Höfte H, Gomez LD, Mcqueen-Mason SJ (2014). Range of cell-wall alterations enhance saccharification in Brachypodium distachyon mutants. Proc Natl Acad Sci U S A, 111:14601-14606. PubMed | DOI

Méchin V, Laluc A, Legée F, Cézard L, Denoue D, Barriere Y, Lapierre C (2014). Impact of the brown-midrib bm5 mutation on maize lignins. J Agric Food Chem, 62:5102-5107. PubMed | DOI

Petrik DL, Karlen SD, Cass CL, Padmakshan D, Lu F, Liu S, Le Bris P, Antelme S, Santoro N, Wilkerson CG, Sibout R, Lapierre C, Ralph J, Sedbrook JC (2014). p-Coumaroyl-CoA:monolignol transferase (PMT) acts specifically in the lignin biosynthetic pathway in Brachypodium distachyon. Plant J, 77:713-726. PubMed | DOI

Pion F, Ducrot PH, Allais F (2014). Renewable Alternating Aliphatic-Aromatic Copolyesters Derived from Biobased Ferulic Acid, Diols, and Diacids: Sustainable Polymers with Tunable Thermal Properties. Macromolecular Chemistry and Physics, 215:431-439. PubMed | DOI

Sipponen M, Laakso S, Baumberger S (2014). Impact of ball milling on maize (Zea mays L.) stem structural components and on enzymatic hydrolysis of carbohydrates. Industrial Crops and Products, 61:130-136. PubMed | DOI

Timpano H, Sibout R, Devaux MF, Alvarado C, Looten R, Falourd X, Pontoire B, Martin M, Legée F, Cézard L, Lapierre C, Badel E, Citerne S, Vernhettes S, Höfte H, Guillon F, Gonneau M (2014). Brachypodium Cell Wall Mutant with Enhanced Saccharification Potential Despite Increased Lignin Content. BioEnergy Research, 8:53-67. PubMed | DOI

Van Acker R, Leple JC, Aerts D, Storme V, Goeminne G, Ivens B, Legée F, Lapierre C, Piens K, Van Montagu MC, Santoro N, Foster CE, Ralph J, Soetaert W, Pilate G, Boerjan W (2014). Improved saccharification and ethanol yield from field-grown transgenic poplar deficient in cinnamoyl-CoA reductase. Proc Natl Acad Sci U S A, 111:845-850. PubMed | DOI

Ayme L, Baud S, Dubreucq B, Joffre F, Chardot T (2014). Function and localization of the Arabidopsis thaliana diacylglycerol acyltransferase DGAT2 expressed in yeast. PLoS One, 9:e92237. PubMed | DOI

Miquel M, Trigui G, D'Andrea S, Kelemen Z, Baud S, Berger A, Deruyffelaere C, Trubuil A, Lepiniec L, Dubreucq B (2014). Specialization of oleosins in oil body dynamics during seed development in Arabidopsis seeds. Plant Physiol, 164:1866-1878. PubMed | DOI

Vermachova M, Purkrtova Z, Santrucek J, Jolivet P, Chardot T, Kodicek M (2014). Combining chymotrypsin/trypsin digestion to identify hydrophobic proteins from oil bodies. Methods Mol Biol, 1072:185-198. PubMed | DOI

Galland M, Boutet S, Lounifi I, Godin B, Balzergue S, Grandjean O, Morin H, Perreau F, Debeaujon I, Rajjou L (2014). Compartmentation and dynamics of flavone metabolism in dry and germinated rice seeds. Plant Cell Physiol, 55:1646-1659. PubMed | DOI

Galland M, Huguet R, Arc E, Cueff G, Job D, Rajjou L (2014). Dynamic proteomics emphasizes the importance of selective mRNA translation and protein turnover during Arabidopsis seed germination. Mol Cell Proteomics, 13:252-268. PubMed | DOI

Jallet D, Thurotte A, Leverenz RL, Perreau F, Kerfeld CA, Kirilovsky D (2014). Specificity of the cyanobacterial orange carotenoid protein: influences of orange carotenoid protein and phycobilisome structures. Plant Physiol, 164:790-804. PubMed | DOI

North HM, Berger A, Saez-Aguayo S, Ralet MC (2014). Understanding polysaccharide production and properties using seed coat mutants: future perspectives for the exploitation of natural variants. Ann Bot, 114:1251-1263. PubMed | DOI

Saez-Aguayo S, Rondeau-Mouro C, Macquet A, Kronholm I, Ralet MC, Berger A, Sallé C, Poulain D, Granier F, Botran L, Loudet O, De Meaux J, Marion-Poll A, North HM (2014). Local evolution of seed flotation in Arabidopsis. PLoS Genet, 10:e1004221. PubMed | DOI