Biomass, Seeds and Bioproducts

Fornale S, Capellades M, Encina A, Wang K, Irar S, Lapierre C, Ruel K, Joseleau JP, Berenguer J, Puigdomenech P, Rigau J, Caparros-Ruiz D (2012). Altered lignin biosynthesis improves cellulosic bioethanol production in transgenic maize plants down-regulated for cinnamyl alcohol dehydrogenase. Mol Plant, 5:817-830. PubMed | DOI

Khandal D, Mikus PY, Dole P, Bliard C, Soulestin J, Lacrampe MF, Baumberger S, Coqueret X (2012). Tailoring the properties of thermoplastic starch by blending with cinnamyl alcohol and radiation processing: An insight into the competitive grafting and scission reactions. Radiation Physics and Chemistry, 81:986-990. PubMed | DOI

Naseer S, Lee Y, Lapierre C, Franke R, Nawrath C, Geldner N (2012). Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin. Proc Natl Acad Sci U S A, 109:10101-10106. PubMed | DOI

Pion F, Ducrot P, Allais F (2012). Biorenewable copolyesters derived from a biobased carbohydrate and lignin. Polymer Preprints, 53:264. PubMed | DOI

Richet N, Afif D, Tozo K, Pollet B, Maillard P, Huber F, Priault P, Banvoy J, Gross P, Dizengremel P, Lapierre C, Perre P, Cabane M (2012). Elevated CO2 and/or ozone modify lignification in the wood of poplars (Populus tremula x alba). J Exp Bot, 63:4291-4301. PubMed | DOI

Acevedo F, Rubilar M, Shene C, Navarrete P, Romero F, Rabert C, Jolivet P, Valot B, Chardot T (2012). Seed oil bodies from Gevuina avellana and Madia sativa. J Agric Food Chem, 60:6994-7004. PubMed | DOI

Beopoulos A, Haddouche R, Kabran P, Dulermo T, Chardot T, Nicaud JM (2012). Identification and characterization of DGA2, an acyltransferase of the DGAT1 acyl-CoA:diacylglycerol acyltransferase family in the oleaginous yeast Yarrowia lipolytica. New insights into the storage lipid metabolism of oleaginous yeasts. Appl Microbiol Biotechnol, 93:1523-1537. PubMed | DOI

Jasinski S, Lécureuil A, Miquel M, Loudet O, Raffaele S, Froissard M, Guerche P (2012). Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in Arabidopsis thaliana. PLoS One, 7:e49261. PubMed | DOI

Mameri H, Bouchez I, Pecquet C, Raison-Peyron N, Choudat D, Chabane H, Kerre S, Denery-Papini S, Gohon Y, Briozzo P, Lauriere M, Snegaroff J (2012). A recombinant omega-gliadin-like D-type glutenin and an alpha-gliadin from wheat (Triticum aestivum): two immunoglobulin E binding proteins, useful for the diagnosis of wheat-dependent allergies. J Agric Food Chem, 60:8059-8068. PubMed | DOI

Mameri H, Denery-Papini S, Pietri M, Tranquet O, Larre C, Drouet M, Paty E, Jonathan AM, Beaudouin E, Moneret-Vautrin DA, Moreau T, Briozzo P, Gaudin JC (2012). Molecular and immunological characterization of wheat Serpin (Tri a 33). Mol Nutr Food Res, 56:1874-1883. PubMed | DOI

Mameri H, Gaudin J, Pietri M, Tranquet O, Larre C, Drouet M, Paty E, Jonathan A, Moneret-Vautrin D, Briozzo P, Denery-Papini S (2012). Serin Protease Inhibitors (Serpins) are wheat allergens containing mainly conformational epitopes. Allergy, 67:602-602. PubMed | DOI

Mameri H, Snegaroff J, Gohon Y, Pecquet C, Choudat D, Raison-Peyron N, Denery-Papini S, Wien F, Briozzo P (2012). Immunoglobulin-E reactivity and structural analysis of wheat low-molecular-weight glutenin subunits and their repetitive and nonrepetitive halves. J Agric Food Chem, 60:7538-7547. PubMed | DOI

Arc E, Chibani K, Grappin P, Jullien M, Godin B, Cueff G, Valot B, Balliau T, Job D, Rajjou L (2012). Cold stratification and exogenous nitrates entail similar functional proteome adjustments during Arabidopsis seed dormancy release. J Proteome Res, 11:5418-5432. PubMed | DOI

Frey A, Effroy D, Lefebvre V, Seo M, Perreau F, Berger A, Séchet J, To A, North HM, Marion-Poll A (2012). Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. Plant J, 70:501-512. PubMed | DOI

Galland M, Job D, Rajjou L (2012). The seed proteome web portal. Front Plant Sci, 3:98. PubMed | DOI

Pochon S, Terrasson E, Guillemette T, Iacomi-Vasilescu B, Georgeault S, Juchaux M, Berruyer R, Debeaujon I, Simoneau P, Campion C (2012). The Arabidopsis thaliana-Alternaria brassicicola pathosystem: A model interaction for investigating seed transmission of necrotrophic fungi. Plant Methods, 8:16. PubMed | DOI

Rajjou L, Duval M, Gallardo K, Catusse J, Bally J, Job C, Job D (2012). Seed germination and vigor. Annu Rev Plant Biol, 63:507-533. PubMed | DOI

Bernard A, Domergue F, Pascal S, Jetter R, Renne C, Faure JD, Haslam RP, Napier JA, Lessire R, Joubes J (2012). Reconstitution of plant alkane biosynthesis in yeast demonstrates that Arabidopsis ECERIFERUM1 and ECERIFERUM3 are core components of a very-long-chain alkane synthesis complex. Plant Cell, 24:3106-3118. PubMed | DOI

Bou-Torrent J, Salla-Martret M, Brandt R, Musielak T, Palauqui JC, Martínez-García JF, Wenkel S (2012). ATHB4 and HAT3, two class II HD-ZIP transcription factors, control leaf development in Arabidopsis. Plant Signal Behav, 7:1382-1387. PubMed | DOI

Brandt R, Salla-Martret M, Bou-Torrent J, Musielak T, Stahl M, Lanz C, Ott F, Schmid M, Greb T, Schwarz M, Choi SB, Barton MK, Reinhart BJ, Liu T, Quint M, Palauqui JC, Martínez-García JF, Wenkel S (2012). Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Plant J, 72:31-42. PubMed | DOI

Truernit E, Bauby H, Belcram K, Barthelemy J, Palauqui JC (2012). OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana. Development, 139:1306-1315. PubMed | DOI

Xue W, Ruprecht C, Street N, Hématy K, Chang C, Frommer WB, Persson S, Niittyla T (2012). Paramutation-like interaction of T-DNA loci in Arabidopsis. PLoS One, 7:e51651. PubMed | DOI

Barthole G, Lepiniec L, Rogowsky PM, Baud S (2012). Controlling lipid accumulation in cereal grains. Plant Sci, 185-186:33-39. PubMed | DOI

Berger N, Dubreucq B (2012). Evolution goes GAGA: GAGA binding proteins across kingdoms. Biochim Biophys Acta, 1819:863-868. PubMed | DOI

Cubillos FA, Yansouni J, Khalili H, Balzergue S, Elftieh S, Martin-Magniette ML, Serrand Y, Lepiniec L, Baud S, Dubreucq B, Renou JP, Camilleri C, Loudet O (2012). Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. BMC Genomics, 13:117. PubMed | DOI

Guillon F, Larre C, Petipas F, Berger A, Moussawi J, Rogniaux H, Santoni A, Saulnier L, Jamme F, Miquel M, Lepiniec L, Dubreucq B (2012). A comprehensive overview of grain development in Brachypodium distachyon variety Bd21. J Exp Bot, 63:739-755. PubMed | DOI

Romano JM, Dubos C, Prouse MB, Wilkins O, Hong H, Poole M, Kang KY, Li E, Douglas CJ, Western TL, Mansfield SD, Campbell MM (2012). AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network. New Phytol, 195:774-786. PubMed | DOI

Routaboul JM, Dubos C, Beck G, Marquis C, Bidzinski P, Loudet O, Lepiniec L (2012). Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis. J Exp Bot, 63:3749-3764. PubMed | DOI

Thévenin J, Dubos C, Xu W, Le Gourrierec J, Kelemen Z, Charlot F, Nogué F, Lepiniec L, Dubreucq B (2012). A new system for fast and quantitative analysis of heterologous gene expression in plants. New Phytol, 193:504-512. PubMed | DOI

To A, Joubes J, Barthole G, Lécureuil A, Scagnelli A, Jasinski S, Lepiniec L, Baud S (2012). WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis. Plant Cell, 24:5007-5023. PubMed | DOI

Trigui G, Laroche B, Miquel M, Dubreucq B, Trubuil A (2012). The dynamics of oil bodies in Arabidopsis thaliana seeds : a mathematical model of biogenesis and coalescence. World Academy of Science, Engineering and Technology, 64:763-768. PubMed | DOI

Allais F, Lancelot A, Pion F, Mazeau K, Méry S, Ducrot P (2011). Synthesis, molecular modeling and characterization of new polyphenolic dendronized polymers via ROMP. Polymer Preprints, 52:379. PubMed | DOI

Barakate A, Stephens J, Goldie A, Hunter WN, Marshall D, Hancock RD, Lapierre C, Morreel K, Boerjan W, Halpin C (2011). Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco. Plant Cell, 23:4492-4506. PubMed | DOI

Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cézard L, Le Bris P, Borrega N, Herve J, Blondet E, Balzergue S, Lapierre C, Jouanin L (2011). Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. Plant Cell, 23:1124-1137. PubMed | DOI

Bouxin F, Baumberger S, Renault JH, Dole P (2011). Study of a specific lignin model: gamma-oxidation and how it influences the hydrolysis efficiency of alcohol-aldehyde dehydrogenation copolymers. Bioresour Technol, 102:5567-5573. PubMed | DOI

Cottyn B, Kollmann A, Waffo-Teguo P, Ducrot PH (2011). Rationalization and in vitro modeling of the chemical mechanisms of the enzymatic oxidation of phenolic compounds in planta: from flavonols and stilbenoids to lignins. Chemistry, 17:7282-7287. PubMed | DOI

Culhaoglu T, Zheng D, Méchin V, Baumberger S (2011). Adaptation of the Carrez procedure for the purification of ferulic and p-coumaric acids released from lignocellulosic biomass prior to LC/MS analysis. J Chromatogr B Analyt Technol Biomed Life Sci, 879:3017-3022. PubMed | DOI

Ducrot PH, Allais F, Pla T (2011). An Access to Chiral ?-Benzyl-?-butyrolactones and Its Application to the Synthesis of Enantiopure (+)-Secoisolariciresinol, (-)-Secoisolariciresinol, and (-)-Enterolactone. Synthesis, 2011:1456-1464. PubMed | DOI

Heiss-Blanquet S, Zheng D, Lopes Ferreira N, Lapierre C, Baumberger S (2011). Effect of pretreatment and enzymatic hydrolysis of wheat straw on cell wall composition, hydrophobicity and cellulase adsorption. Bioresour Technol, 102:5938-5946. PubMed | DOI

Louaifi A, Guinault A, Domenek S, Ducruet V, Baumberger S (2011). Valorisation of industrial lignon as additive with antioxidiant properties in PLA. Italian Journal of Food Science, 23:142-145. PubMed | DOI

Richet N, Afif D, Huber F, Pollet B, Banvoy J, El Zein R, Lapierre C, Dizengremel P, Perre P, Cabane M (2011). Cellulose and lignin biosynthesis is altered by ozone in wood of hybrid poplar (Populus tremula x alba). J Exp Bot, 62:3575-3586. PubMed | DOI

Tamasloukht B, Wong Quai Lam MS, Martinez Y, Tozo K, Barbier O, Jourda C, Jauneau A, Borderies G, Balzergue S, Renou JP, Huguet S, Martinant JP, Tatout C, Lapierre C, Barriere Y, Goffner D, Pichon M (2011). Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression. J Exp Bot, 62:3837-3848. PubMed | DOI

Thévenin J, Pollet B, Letarnec B, Saulnier L, Gissot L, Maia-Grondard A, Lapierre C, Jouanin L (2011). The simultaneous repression of CCR and CAD, two enzymes of the lignin biosynthetic pathway, results in sterility and dwarfism in Arabidopsis thaliana. Mol Plant, 4:70-82. PubMed | DOI

Zhang Y, Culhaoglu T, Pollet B, Melin C, Denoue D, Barriere Y, Baumberger S, Méchin V (2011). Impact of lignin structure and cell wall reticulation on maize cell wall degradability. J Agric Food Chem, 59:10129-10135. PubMed | DOI

Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH, Rakwal R (2011). Plant organelle proteomics: collaborating for optimal cell function. Mass Spectrom Rev, 30:772-853. PubMed | DOI

Gohon Y, Vindigni JD, Pallier A, Wien F, Celia H, Giuliani A, Tribet C, Chardot T, Briozzo P (2011). High water solubility and fold in amphipols of proteins with large hydrophobic regions: oleosins and caleosin from seed lipid bodies. Biochim Biophys Acta, 1808:706-716. PubMed | DOI

Jolivet P, Boulard C, Bellamy A, Valot B, D'Andrea S, Zivy M, Nesi N, Chardot T (2011). Oil body proteins sequentially accumulate throughout seed development in Brassica napus. J Plant Physiol, 168:2015-2020. PubMed | DOI

Kopecný D, Tylichova M, Snegaroff J, Popelkova H, Sebela M (2011). Carboxylate and aromatic active-site residues are determinants of high-affinity binding of omega-aminoaldehydes to plant aminoaldehyde dehydrogenases. FEBS J, 278:3130-3139. PubMed | DOI

Popluechai S, Froissard M, Jolivet P, Breviario D, Gatehouse AM, O'donnell AG, Chardot T, Kohli A (2011). Jatropha curcas oil body proteome and oleosins: L-form JcOle3 as a potential phylogenetic marker. Plant Physiol Biochem, 49:352-356. PubMed | DOI

Vermachova M, Purkrtova Z, Santrucek J, Jolivet P, Chardot T, Kodicek M (2011). New protein isoforms identified within Arabidopsis thaliana seed oil bodies combining chymotrypsin/trypsin digestion and peptide fragmentation analysis. Proteomics, 11:3430-3434. PubMed | DOI