Biomass, Seeds and Bioproducts

Boccaccini A, Santopolo S, Capauto D, Lorrai R, Minutello E, Belcram K, Palauqui JC, Costantino P, Vittorioso P (2014). Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination. BMC Plant Biol, 14:200. PubMed | DOI

Julie-Galau S, Bellec Y, Faure JD, Tepfer M (2014). Evaluation of the potential for interspecific hybridization between Camelina sativa and related wild Brassicaceae in anticipation of field trials of GM camelina. Transgenic Res, 23:67-74. PubMed | DOI

Molino D, Van Der Giessen E, Gissot L, Hématy K, Marion J, Barthelemy J, Bellec Y, Vernhettes S, Satiat-Jeunemaitre B, Galli T, Tareste D, Faure JD (2014). Inhibition of very long acyl chain sphingolipid synthesis modifies membrane dynamics during plant cytokinesis. Biochim Biophys Acta, 1842:1422-1430. PubMed | DOI

Roschzttardtz H, Paez-Valencia J, Dittakavi T, Jali S, Reyes FC, Baisa G, Anne P, Gissot L, Palauqui JC, Masson PH, Bednarek SY, Otegui MS (2014). The VASCULATURE COMPLEXITY AND CONNECTIVITY gene encodes a plant-specific protein required for embryo provasculature development. Plant Physiol, 166:889-902. PubMed | DOI

Tellier F, Maia-Grondard A, Schmitz-Afonso I, Faure JD (2014). Comparative plant sphingolipidomic reveals specific lipids in seeds and oil. Phytochemistry, 103:50-58. PubMed | DOI

Trontin C, Kiani S, Corwin JA, Hématy K, Yansouni J, Kliebenstein DJ, Loudet O (2014). A pair of receptor-like kinases is responsible for natural variation in shoot growth response to mannitol treatment in Arabidopsis thaliana. Plant J, 78:121-133. PubMed | DOI

Barthole G, To A, Marchive C, Brunaud V, Soubigou-Taconnat L, Berger N, Dubreucq B, Lepiniec L, Baud S (2014). MYB118 represses endosperm maturation in seeds of Arabidopsis. Plant Cell, 26:3519-3537. PubMed | DOI

David LC, Dechorgnat J, Berquin P, Routaboul JM, Debeaujon I, Daniel-Vedele F, Ferrario-Méry S (2014). Proanthocyanidin oxidation of Arabidopsis seeds is altered in mutant of the high-affinity nitrate transporter NRT2.7. J Exp Bot, 65:885-893. PubMed | DOI

Denay G, Creff A, Moussu S, Wagnon P, Thévenin J, Gerentes MF, Chambrier P, Dubreucq B, Ingram G (2014). Endosperm breakdown in Arabidopsis requires heterodimers of the basic helix-loop-helix proteins ZHOUPI and INDUCER OF CBP EXPRESSION 1. Development, 141:1222-1227. PubMed | DOI

Dubos C, Kelemen Z, Sebastian A, Bulow L, Huep G, Xu W, Grain D, Salsac F, Brousse C, Lepiniec L, Weisshaar B, Contreras-Moreira B, Hehl R (2014). Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes. BMC Genomics, 15:317. PubMed | DOI

Dugail I, Kalopissis A, Miquel M, Rainteau D, Zachowski A, Forest C (2014). Lipids in metabolic diseases. Biochimie, 96:1-2. PubMed | DOI

Magnani E, De Klein N, Nam HI, Kim JG, Pham K, Fiume E, Mudgett MB, Rhee SY (2014). A comprehensive analysis of microProteins reveals their potentially widespread mechanism of transcriptional regulation. Plant Physiol, 165:149-159. PubMed | DOI

Marchive C, Nikovics K, To A, Lepiniec L, Baud S (2014). Transcriptional regulation of fatty acid production in higher plants: Molecular bases and biotechnological outcomes. European Journal of Lipid Science and Technology, 116:1332-1343. PubMed | DOI

Masclaux-Daubresse C, Clément G, Anne P, Routaboul JM, Guiboileau A, Soulay F, Shirasu K, Yoshimoto K (2014). Stitching together the Multiple Dimensions of Autophagy Using Metabolomics and Transcriptomics Reveals Impacts on Metabolism, Development, and Plant Responses to the Environment in Arabidopsis. Plant Cell, 26:1857-1877. PubMed | DOI

Simons M, Saha R, Amiour N, Kumar A, Guillard L, Clément G, Miquel M, Li Z, Mouille G, Lea PJ, Hirel B, Maranas CD (2014). Assessing the metabolic impact of nitrogen availability using a compartmentalized maize leaf genome-scale model. Plant Physiol, 166:1659-1674. PubMed | DOI

Xu W, Grain D, Bobet S, Le Gourrierec J, Thévenin J, Kelemen Z, Lepiniec L, Dubos C (2014). Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB-bHLH-WDR complexes and their targets in Arabidopsis seed. New Phytol, 202:132-144. PubMed | DOI

Xu W, Lepiniec L, Dubos C (2014). New insights toward the transcriptional engineering of proanthocyanidin biosynthesis. Plant Signal Behav, 9:e28736. PubMed | DOI

Barriere Y, Chavigneau H, Delaunay S, Courtial A, Bosio M, Lassagne H, Derory J, Lapierre C, Méchin V, Tatout C (2013). Different mutations in the ZmCAD2 gene underlie the maize brown-midrib1 (bm1) phenotype with similar effects on lignin characteristics and have potential interest for bioenergy production. Maydica, 58:6-20. PubMed | DOI

Bouvier D'yvoire M, Bouchabké-Coussa O, Voorend W, Antelme S, Cézard L, Legée F, Le Bris P, Legay S, Whitehead C, Mcqueen-Mason SJ, Gomez LD, Jouanin L, Lapierre C, Sibout R (2013). Disrupting the cinnamyl alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon. Plant J, 73:496-508. PubMed | DOI

Caderby E, Baumberger S, Hoareau W, Fargues C, Decloux M, Maillard MN (2013). Sugar cane stillage: a potential source of natural antioxidants. J Agric Food Chem, 61:11494-11501. PubMed | DOI

Dalmais M, Antelme S, Ho-Yue-Kuang S, Wang Y, Darracq O, D'yvoire MB, Cézard L, Legée F, Blondet E, Oria N, Troadec C, Brunaud V, Jouanin L, Höfte H, Bendahmane A, Lapierre C, Sibout R (2013). A TILLING Platform for Functional Genomics in Brachypodium distachyon. PLoS One, 8:e65503. PubMed | DOI

Domenek S, Louaifi A, Guinault A, Baumberger S (2013). Potential of Lignins as Antioxidant Additive in Active Biodegradable Packaging Materials. Journal of Polymers and the Environment, 21:692-701. PubMed | DOI

Frerot B, Delle-Vedove R, Beaudoin-Ollivier L, Zagatti P, Ducrot PH, Grison C, Hossaert M, Petit E (2013). Fragrant legs in Paysandisia archon males (Lepidoptera, Castniidae). Chemoecology, 23:137-142. PubMed | DOI

Mouterde LMM, Flourat AL, Cannet MMM, Ducrot PH, Allais F (2013). Chemoenzymatic Total Synthesis of a Naturally Occurring (5-5')/(8'-O-4") Dehydrotrimer of Ferulic Acid. European Journal of Organic Chemistry, 2013:173-179. PubMed | DOI

Pion F, Reano AF, Ducrot PH, Allais F (2013). Chemo-enzymatic preparation of new bio-based bis- and trisphenols: new versatile building blocks for polymer chemistry. RSC Advances, 3:8988. PubMed | DOI

Reynaud C, Tapin-Lingua S, Elegir G, Petit-Conil M, Baumberger S (2013). Enhancement of hydrophobicity of kraft pulp via a laccase-lauryl gallate treatment. Journal of Science & Technology for Forest Products and Processes, 3:33-38. PubMed | DOI

Reynaud C, Tapin-Lingua S, Elegir G, Petit-Conil M, Baumberger S (2013). Hydrophobic properties conferred to Kraft pulp by a laccase-catalysed treatment with lauryl gallate. J Biotechnol, 167:302-308. PubMed | DOI

Schumacher J, Gautier A, Morgant G, Studt L, Ducrot PH, Le Pecheur P, Azeddine S, Fillinger S, Leroux P, Tudzynski B, Viaud M (2013). A functional bikaverin biosynthesis gene cluster in rare strains of Botrytis cinerea is positively controlled by VELVET. PLoS One, 8:e53729. PubMed | DOI

Sipponen MH, Lapierre C, Méchin V, Baumberger S (2013). Isolation of structurally distinct lignin-carbohydrate fractions from maize stem by sequential alkaline extractions and endoglucanase treatment. Bioresour Technol, 133:522-528. PubMed | DOI

Zhang Y, Legay S, Barriere Y, Méchin V, Legland D (2013). Color quantification of stained maize stem section describes lignin spatial distribution within the whole stem. J Agric Food Chem, 61:3186-3192. PubMed | DOI

Haili N, Arnal N, Quadrado M, Amiar S, Tcherkez G, Dahan J, Briozzo P, Colas Des Francs-Small C, Vrielynck N, Mireau H (2013). The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria. Nucleic Acids Res, 41:6650-6663. PubMed | DOI

Jamme F, Vindigni JD, Méchin V, Cherifi T, Chardot T, Froissard M (2013). Single cell synchrotron FT-IR microspectroscopy reveals a link between neutral lipid and storage carbohydrate fluxes in S. cerevisiae. PLoS One, 8:e74421. PubMed | DOI

Jolivet P, Acevedo F, Boulard C, D'Andrea S, Faure JD, Kohli A, Nesi N, Valot B, Chardot T (2013). Crop seed oil bodies: from challenges in protein identification to an emerging picture of the oil body proteome. Proteomics, 13:1836-1849. PubMed | DOI

Jolivet P, Deruyffelaere C, Boulard C, Quinsac A, Savoire R, Nesi N, Chardot T (2013). Deciphering the structural organization of the oil bodies in the Brassica napus seed as a mean to improve the oil extraction yield. Industrial Crops and Products, 44:549-557. PubMed | DOI

Kubienova L, Kopecný D, Tylichova M, Briozzo P, Skopalova J, Sebela M, Navratil M, Tache R, Luhova L, Barroso JB, Petrivalsky M (2013). Structural and functional characterization of a plant S-nitrosoglutathione reductase from Solanum lycopersicum. Biochimie, 95:889-902. PubMed | DOI

Le Marechal P, Decottignies P, Marchand CH, Degrouard J, Jaillard D, Dulermo T, Froissard M, Smirnov A, Chapuis V, Virolle MJ (2013). Comparative proteomic analysis of Streptomyces lividans Wild-Type and ppk mutant strains reveals the importance of storage lipids for antibiotic biosynthesis. Appl Environ Microbiol, 79:5907-5917. PubMed | DOI

Snegaroff J, Bouchez I, Smaali Mel A, Pecquet C, Raison-Peyron N, Jolivet P, Lauriere M (2013). Barley gamma3-hordein: glycosylation at an atypical site, disulfide bridge analysis, and reactivity with IgE from patients allergic to wheat. Biochim Biophys Acta, 1834:395-403. PubMed | DOI

Vindigni JD, Wien F, Giuliani A, Erpapazoglou Z, Tache R, Jagic F, Chardot T, Gohon Y, Froissard M (2013). Fold of an oleosin targeted to cellular oil bodies. Biochim Biophys Acta, 1828:1881-1888. PubMed | DOI

Amborella Genome Project (2013). The Amborella genome and the evolution of flowering plants. Science, 342:1241089. PubMed | DOI

Arc E, Galland M, Godin B, Cueff G, Rajjou L (2013). Nitric oxide implication in the control of seed dormancy and germination. Front Plant Sci, 4:346. PubMed | DOI

Arc E, Séchet J, Corbineau F, Rajjou L, Marion-Poll A (2013). ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination. Front Plant Sci, 4:63. PubMed | DOI

Lounifi I, Arc E, Molassiotis A, Job D, Rajjou L, Tanou G (2013). Interplay between protein carbonylation and nitrosylation in plants. Proteomics, 13:568-578. PubMed | DOI

Saez-Aguayo S, Ralet MC, Berger A, Botran L, Ropartz D, Marion-Poll A, North HM (2013). PECTIN METHYLESTERASE INHIBITOR6 promotes Arabidopsis mucilage release by limiting methylesterification of homogalacturonan in seed coat epidermal cells. Plant Cell, 25:308-323. PubMed | DOI

Nikolaev SV, Kolchanov NA, Golushko SK, Palauqui JC, Urban A, Amelina EV, Yurchenko AV, Golushko KS, Zubairova US, Penenko AV, Trubuil A (2013). Modeling of plant embryo morphodynamics at early developmental stages. Russian Journal of Genetics: Applied Research, 3:176-183. PubMed | DOI

Vilaine F, Kerchev P, Clément G, Batailler B, Cayla T, Bill L, Gissot L, Dinant S (2013). Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis. Plant Cell, 25:1689-1708. PubMed | DOI

Li-Beisson Y, Shorrosh B, Beisson F, Andersson MX, Arondel V, Bates PD, Baud S, Bird D, Debono A, Durrett TP, Franke RB, Graham IA, Katayama K, Kelly AA, Larson T, Markham JE, Miquel M, Molina I, Nishida I, Rowland O, Samuels L, Schmid KM, Wada H, Welti R, Xu C, Zallot R, Ohlrogge J (2013). Acyl-lipid metabolism. Arabidopsis Book, 11:e0161. PubMed | DOI

Schaart JG, Dubos C, Romero De La Fuente I, Van Houwelingen AM, De Vos RC, Jonker HH, Xu W, Routaboul JM, Lepiniec L, Bovy AG (2013). Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria x ananassa) fruits. New Phytol, 197:454-467. PubMed | DOI

Xu W, Grain D, Le Gourrierec J, Harscoet E, Berger A, Jauvion V, Scagnelli A, Berger N, Bidzinski P, Kelemen Z, Salsac F, Baudry A, Routaboul JM, Lepiniec L, Dubos C (2013). Regulation of flavonoid biosynthesis involves an unexpected complex transcriptional regulation of TT8 expression, in Arabidopsis. New Phytol, 198:59-70. PubMed | DOI

Chapelle A, Morreel K, Vanholme R, Le Bris P, Morin H, Lapierre C, Boerjan W, Jouanin L, Demont-Caulet N (2012). Impact of the absence of stem-specific beta-glucosidases on lignin and monolignols. Plant Physiol, 160:1204-1217. PubMed | DOI

Eudes A, George A, Mukerjee P, Kim JS, Pollet B, Benke PI, Yang F, Mitra P, Sun L, Cetinkol OP, Chabout S, Mouille G, Soubigou-Taconnat L, Balzergue S, Singh S, Holmes BM, Mukhopadhyay A, Keasling JD, Simmons BA, Lapierre C, Ralph J, Loque D (2012). Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification. Plant Biotechnol J, 10:609-620. PubMed | DOI