Physiology and Interactions

Leran S, Varala K, Boyer JC, Chiurazzi M, Crawford N, Daniel-Vedele F., David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong JM, Halkier BA, Harris JM, Hedrich R, Limami AM, Rentsch D, Seo M, Tsay YF, Zhang M, Coruzzi G, Lacombe B (2014). A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci, 19:5-9. PubMed | DOI

Lezhneva L, Kiba T, Feria-Bourrellier AB, Lafouge F, Boutet S, Zoufan P, Sakakibara H, Daniel-Vedele F., Krapp A (2014). The Arabidopsis nitrate transporter NRT2.5 plays a role in nitrate acquisition and remobilization in nitrogen-starved plants. Plant J, 80:230-241. PubMed | DOI

Bellini C, Pacurar DI, Perrone I (2014). Adventitious roots and lateral roots: similarities and differences. Annu Rev Plant Biol, 65:639-666. PubMed | DOI

Mauriat M, Petterle A, Bellini C, Moritz T (2014). Gibberellins inhibit adventitious rooting in hybrid aspen and Arabidopsis by affecting auxin transport. Plant J, 78:372-384. PubMed | DOI

Pacurar DI, Pacurar ML, Bussell JD, Schwambach J, Pop TI, Kowalczyk M, Gutierrez L, Cavel E, Chaabouni S, Ljung K, Fett-Neto AG, Pamfil D, Bellini C (2014). Identification of new adventitious rooting mutants amongst suppressors of the Arabidopsis thaliana superroot2 mutation. J Exp Bot, 65:1605-1618. PubMed | DOI

Pacurar DI, Pacurar ML, Pacurar AM, Gutierrez L, Bellini C (2014). A novel viable allele of Arabidopsis CULLIN1 identified in a screen for superroot2 suppressors by next generation sequencing-assisted mapping. PLoS One, 9:e100846. PubMed | DOI

Pacurar DI, Perrone I, Bellini C (2014). Auxin is a central player in the hormone cross-talks that control adventitious rooting. Physiol Plant, 151:83-96. PubMed | DOI

Ihnatowicz A, Siwinska J, Meharg AA, Carey M, Koornneef M, Reymond M (2014). Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures. New Phytol, 202:1173-1183. PubMed | DOI

Méchin V, Laluc A, Legée F, Cézard L, Denoue D, Barriere Y, Lapierre C (2014). Impact of the brown-midrib bm5 mutation on maize lignins. J Agric Food Chem, 62:5102-5107. PubMed | DOI

Schmalenbach I, Zhang L, Reymond M, Jiménez-Gómez JM (2014). The relationship between flowering time and growth responses to drought in the Arabidopsis Landsberg erecta x Antwerp-1 population. Front Plant Sci, 5:609. PubMed | DOI

Avila-Ospina L, Moison M, Yoshimoto K, Masclaux-Daubresse C (2014). Autophagy, plant senescence, and nutrient recycling. J Exp Bot, 65:3799-3811. PubMed | DOI

Masclaux-Daubresse C, Clément G, Anne P, Routaboul JM, Guiboileau A, Soulay F, Shirasu K, Yoshimoto K (2014). Stitching together the Multiple Dimensions of Autophagy Using Metabolomics and Transcriptomics Reveals Impacts on Metabolism, Development, and Plant Responses to the Environment in Arabidopsis. Plant Cell, 26:1857-1877. PubMed | DOI

Merkulova EA, Guiboileau A, Naya L, Masclaux-Daubresse C, Yoshimoto K (2014). Assessment and optimization of autophagy monitoring methods in Arabidopsis roots indicate direct fusion of autophagosomes with vacuoles. Plant Cell Physiol, 55:715-726. PubMed | DOI

Orsel M, Moison M, Clouet V, Thomas J, Leprince F, Canoy AS, Just J, Chalhoub B, Masclaux-Daubresse C (2014). Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence. J Exp Bot, 65:3927-3947. PubMed | DOI

Pottier M, Masclaux-Daubresse C, Yoshimoto K, Thomine S (2014). Autophagy as a possible mechanism for micronutrient remobilization from leaves to seeds. Front Plant Sci, 5:11. PubMed | DOI

Shibata M, Oikawa K, Yoshimoto K, Goto-Yamada S, Mano S, Yamada K, Kondo M, Hayashi M, Sakamoto W, Ohsumi Y, Nishimura M (2014). Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality. Autophagy, 10:936-937. PubMed | DOI

Yoshimoto K, Shibata M, Kondo M, Oikawa K, Sato M, Toyooka K, Shirasu K, Nishimura M, Ohsumi Y (2014). Organ-specific quality control of plant peroxisomes is mediated by autophagy. J Cell Sci, 127:1161-1168. PubMed | DOI

Fontaine JX, Terce-Laforgue T, Bouton S, Pageau K, Lea PJ, Dubois F, Hirel B (2013). Further insights into the isoenzyme composition and activity of glutamate dehydrogenase in Arabidopsis thaliana. Plant Signal Behav, 8:e23329. PubMed | DOI

Marchi L, Degola F, Polverini E, Terce-Laforgue T, Dubois F, Hirel B, Restivo FM (2013). Glutamate dehydrogenase isoenzyme 3 (GDH3) of Arabidopsis thaliana is regulated by a combined effect of nitrogen and cytokinin. Plant Physiol Biochem, 73:368-374. PubMed | DOI

Terce-Laforgue T, Bedu M, Dargel-Graffin C, Dubois F, Gibon Y, Restivo FM, Hirel B (2013). Resolving the role of plant glutamate dehydrogenase: II. Physiological characterization of plants overexpressing the two enzyme subunits individually or simultaneously. Plant Cell Physiol, 54:1635-1647. PubMed | DOI

Gallois JL, Drouaud J, Lécureuil A, Guyon-Debast A, Bonhomme S, Guerche P (2013). Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 526:299-308. PubMed | DOI

Tisne S, Serrand Y, Bach L, Gilbault E, Ben Ameur R, Balasse H, Voisin R, Bouchez D, Durand-Tardif M, Guerche P, Chareyron G, Da Rugna J, Camilleri C, Loudet O (2013). Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant J, 74:534-544. PubMed | DOI

Chardon F, Bedu M, Calenge F, Klemens PA, Spinner L, Clément G, Chietera G, Leran S, Ferrand M, Lacombe B, Loudet O, Dinant S, Bellini C, Neuhaus HE, Daniel-Vedele F., Krapp A (2013). Leaf fructose content is controlled by the vacuolar transporter SWEET17 in Arabidopsis. Curr Biol, 23:697-702. PubMed | DOI

Dobrenel T, Marchive C, Azzopardi M, Clément G, Moreau M, Sormani R, Robaglia C, Meyer C (2013). Sugar metabolism and the plant target of rapamycin kinase: a sweet operaTOR?. Front Plant Sci, 4:93. PubMed | DOI

Klemens PA, Patzke K, Deitmer J, Spinner L, Le Hir R, Bellini C, Bedu M, Chardon F, Krapp A, Neuhaus HE (2013). Overexpression of the vacuolar sugar carrier AtSWEET16 modifies germination, growth, and stress tolerance in Arabidopsis. Plant Physiol, 163:1338-1352. PubMed | DOI

Marchive C, Roudier F, Castaings L, Bréhaut V, Blondet E, Colot V, Meyer C, Krapp A (2013). Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants. Nat Commun, 4:1713. PubMed | DOI

Bouchabké-Coussa O, Obellianne M, Linderme D, Montes E, Maia-Grondard A, Vilaine F, Pannetier C (2013). Wuschel overexpression promotes somatic embryogenesis and induces organogenesis in cotton (Gossypium hirsutum L.) tissues cultured in vitro. Plant Cell Rep, 32:675-686. PubMed | DOI

Le Hir R, Bellini C (2013). The plant-specific dof transcription factors family: new players involved in vascular system development and functioning in Arabidopsis. Front Plant Sci, 4:164. PubMed | DOI

Le Hir R, Sorin C, Chakraborti D, Moritz T, Schaller H, Tellier F, Robert S, Morin H, Bako L, Bellini C (2013). ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis. Plant J, 76:811-824. PubMed | DOI

Van Bel AJ, Helariutta Y, Thompson GA, Ton J, Dinant S, Ding B, Patrick JW (2013). Phloem: the integrative avenue for resource distribution, signaling, and defense. Front Plant Sci, 4:471. PubMed | DOI

Vilaine F, Kerchev P, Clément G, Batailler B, Cayla T, Bill L, Gissot L, Dinant S (2013). Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis. Plant Cell, 25:1689-1708. PubMed | DOI

Barriere Y, Chavigneau H, Delaunay S, Courtial A, Bosio M, Lassagne H, Derory J, Lapierre C, Méchin V, Tatout C (2013). Different mutations in the ZmCAD2 gene underlie the maize brown-midrib1 (bm1) phenotype with similar effects on lignin characteristics and have potential interest for bioenergy production. Maydica, 58:6-20. PubMed | DOI

Bouvier D'yvoire M, Bouchabké-Coussa O, Voorend W, Antelme S, Cézard L, Legée F, Le Bris P, Legay S, Whitehead C, Mcqueen-Mason SJ, Gomez LD, Jouanin L, Lapierre C, Sibout R (2013). Disrupting the cinnamyl alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon. Plant J, 73:496-508. PubMed | DOI

Courtial A, Méchin V, Reymond M, Grima-Pettenati J, Barriere Y (2013). Colocalizations Between Several QTLs for Cell Wall Degradability and Composition in the F288 × F271 Early Maize RIL Progeny Raise the Question of the Nature of the Possible Underlying Determinants and Breeding Targets for Biofuel Capacity. BioEnergy Research, 7:142-156. PubMed | DOI

Courtial A, Soler M, Chateigner-Boutin A, Reymond M, Méchin V, Wang H, Grima-Pettenati J, Barriere Y (2013). Breeding grasses for capacity to biofuel production or silage feeding value: an updated list of genes involved in maize secondary cell wall biosynthesis and assembly. Maydica, 58:67-102. PubMed | DOI

Courtial A, Thomas J, Reymond M, Méchin V, Grima-Pettenati J, Barriere Y (2013). Targeted linkage map densification to improve cell wall related QTL detection and interpretation in maize. Theor Appl Genet, 126:1151-1165. PubMed | DOI

Lam M, Martinez Y, Barbier O, Jauneau A, Balzergue S, Huguet S, Pollet B, Méchin V, Guillon F, Robert P, Dumon C, O'donohue M, Goffner D, Pichon M (2013). Combined approaches provide an anatomical and transcriptomic fingerprint of maize cell wall digestibility. Maydica, 58:274-287. PubMed | DOI

Sipponen MH, Lapierre C, Méchin V, Baumberger S (2013). Isolation of structurally distinct lignin-carbohydrate fractions from maize stem by sequential alkaline extractions and endoglucanase treatment. Bioresour Technol, 133:522-528. PubMed | DOI

Zhang Y, Legay S, Barriere Y, Méchin V, Legland D (2013). Color quantification of stained maize stem section describes lignin spatial distribution within the whole stem. J Agric Food Chem, 61:3186-3192. PubMed | DOI

De Pessemier J, Chardon F, Juraniec M, Delaplace P, Hermans C (2013). Natural variation of the root morphological response to nitrate supply in Arabidopsis thaliana. Mech Dev, 130:45-53. PubMed | DOI

Debouba M, Dguimi HM, Ghorbel M, Gouia H, Suzuki A (2013). Expression pattern of genes encoding nitrate and ammonium assimilating enzymes in Arabidopsis thaliana exposed to short term NaCl stress. J Plant Physiol, 170:155-160. PubMed | DOI

Gaufichon L, Masclaux-Daubresse C, Tcherkez G, Reisdorf-Cren M, Sakakibara Y, Hase T, Clément G, Avice JC, Grandjean O, Marmagne A, Boutet S, Azzopardi M, Soulay F, Suzuki A (2013). Arabidopsis thaliana ASN2 encoding asparagine synthetase is involved in the control of nitrogen assimilation and export during vegetative growth. Plant Cell Environ, 36:328-342. PubMed | DOI

Guiboileau A, Avila-Ospina L, Yoshimoto K, Soulay F, Azzopardi M, Marmagne A, Lothier J, Masclaux-Daubresse C (2013). Physiological and metabolic consequences of autophagy deficiency for the management of nitrogen and protein resources in Arabidopsis leaves depending on nitrate availability. New Phytol, 199:683-694. PubMed | DOI

Kellermeier F, Chardon F, Amtmann A (2013). Natural variation of Arabidopsis root architecture reveals complementing adaptive strategies to potassium starvation. Plant Physiol, 161:1421-1432. PubMed | DOI

Shibata M, Oikawa K, Yoshimoto K, Kondo M, Mano S, Yamada K, Hayashi M, Sakamoto W, Ohsumi Y, Nishimura M (2013). Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis. Plant Cell, 25:4967-4983. PubMed | DOI

Amiour N, Imbaud S, Clément G, Agier N, Zivy M, Valot B, Balliau T, Armengaud P, Quilleré I, Canas R, Tercet-Laforgue T, Hirel B (2012). The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. J Exp Bot, 63:5017-5033. PubMed | DOI

Cañas RA, Quilleré I, Gallais A, Hirel B (2012). Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield?. New Phytol, 194:440-452. PubMed | DOI

Fontaine JX, Terce-Laforgue T, Armengaud P, Clément G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B, Dubois F (2012). Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. Plant Cell, 24:4044-4065. PubMed | DOI

Jasinski S, Lécureuil A, Miquel M, Loudet O, Raffaele S, Froissard M, Guerche P (2012). Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in Arabidopsis thaliana. PLoS One, 7:e49261. PubMed | DOI

To A, Joubes J, Barthole G, Lécureuil A, Scagnelli A, Jasinski S, Lepiniec L, Baud S (2012). WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis. Plant Cell, 24:5007-5023. PubMed | DOI