Design, Engineering, Compartmentalization of Lipid Metabolism

Ducloy A, Azzopardi M, Ivsic C, Cueff G, Sourdeval D, Charif D, Cacas JL (2024). A transcriptomic dataset for investigating the Arabidopsis Unfolded Protein Response under chronic, proteotoxic endoplasmic reticulum stress. Data Brief, 53:110243. PubMed | DOI

Gissot L, Fontaine F, Kelemen Z, Dao O, Bouchez I, Deruyffelaere C, Winkler M, Da Costa A, Pierre F, Meziadi C, Faure JD, Froissard M (2023). E and M SARS-CoV-2 membrane protein expression and enrichment with plant lipid droplets. Biotechnol J, e2300512. PubMed | DOI

Großkinsky DK, Faure JD, Gibon Y, Haslam RP, Usadel B, Zanetti F, Jonak C (2023). The potential of integrative phenomics to harness underutilized crops for improving stress resilience. Front Plant Sci, 14:1216337. PubMed | DOI

Barbosa ICR, De Bellis D, Flückiger I, Bellani E, Grangé-Guerment M, Hématy K, Geldner N (2023). Directed growth and fusion of membrane-wall microdomains requires CASP-mediated inhibition and displacement of secretory foci. Nat Commun, 14(1):1626. PubMed | DOI

Lopez C, Sotin H, Rabesona H, Novales B, Le Quéré JM, Froissard M, Faure JD, Guyot S, Anton M (2023). Oil Bodies from Chia (Salvia hispanica L.) and Camelina (Camelina sativa L.) Seeds for Innovative Food Applications: Microstructure, Composition and Physical Stability. Foods, 12(1):211. PubMed | DOI

Bellec Y, Guyon-Debast A, Francois T, Gissot L, Biot E, Nogué F, Faure JD, Tepfer M (2022). New Flowering and Architecture Traits Mediated by Multiplex CRISPR-Cas9 Gene Editing in Hexaploid Camelina sativa. Agronomy, 12(8): 1873. DOI

Hématy K, De Bellis D, Wang X, Mähönen AP, Geldner N (2022). Analysis of exocyst function in endodermis reveals its widespread contribution and specificity of action. Plant Physiol, kiac019. PubMed | DOI

Gomez RE, Lupette J, Chambaud C, Castets J, Ducloy A, Cacas JL, Masclaux-Daubresse C, Bernard A (2021). How Lipids Contribute to Autophagosome Biogenesis, a Critical Process in Plant Responses to Stresses. Cells, 10(6):1272. PubMed | DOI

Sakai K, Citerne S, Antelme S, Le Bris P, Daniel S, Bouder A, D'Orlando A, Cartwright A, Tellier F, Pateyron S, Delannoy E, Laudencia-Chingcuanco D, Mouille G, Palauqui JC, Vogel J, Sibout R (2021). BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon. BMC Plant Biol, 21(1):196. PubMed | DOI

Bruggeman Q, Piron-Prunier F, Tellier F, Faure JD, Latrasse D, Manza-Mianza D, Mazubert C, Citerne S, Boutet S, Lugan R, Bergounioux C, Raynaud C, Benhamed M, Delarue M (2020). Involvement of Arabidopsis BIG protein in cell death mediated by Myo-inositol homeostasis. Sci Rep, 10(1):11268. PubMed | DOI

Hermier D, Lan A, Tellier F, Blais A, Culetto MG, Mathe V, Bellec Y, Gissot L, Schmidely P, Faure JD (2020). Intestinal Availability and Metabolic Effects of Dietary Camelina Sphingolipids during the Metabolic Syndrome Onset in Mice. J Agric Food Chem, 68:788-798. PubMed | DOI

Jamme F, Cinquin B, Gohon Y, Pereiro E, Refregiers M, Froissard M (2020). Synchrotron multimodal imaging in a whole cell reveals lipid droplet core organization. J Synchrotron Radiat, 27:772-778. PubMed | DOI

Kelemen Z, Zhang R, Gissot L, Chouket R, Bellec Y, Croquette V, Jullien L, Faure JD, Le Saux T (2020). Dynamic Contrast for Plant Phenotyping. ACS Omega, 5(25):15105-15114. PubMed | DOI

Masclaux-Daubresse C, D'Andrea S, Bouchez I, Cacas JL (2020). Reserve lipids and plant autophagy. J Exp Bot, 71:2854-2861. PubMed | DOI

Have M, Luo J, Tellier F, Balliau T, Cueff G, Chardon F, Zivy M, Rajjou L, Cacas JL, Masclaux-Daubresse C (2019). Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in endoplasmic reticulum and peroxisome metabolisms and in lipid composition. New Phytol, 223:1461-1477. PubMed | DOI

Martiniere A, Fiche JB, Smokvarska M, Mari S, Alcon C, Dumont X, Hématy K, Jaillais Y, Nollmann M, Maurel C (2019). Osmotic Stress Activates Two Reactive Oxygen Species Pathways with Distinct Effects on Protein Nanodomains and Diffusion. Plant Physiol, 179:1581-1593. PubMed | DOI

Moukhtar J, Trubuil A, Belcram K, Legland D, Khadir Z, Urbain A, Palauqui JC, Andrey P (2019). Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. PLoS Comput Biol, 15:e1006771. PubMed | DOI

Sakai K, Charlot F, Le Saux T, Bonhomme S, Nogué F, Palauqui JC, Fattaccioli J (2019). Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology. Plant Methods, 15:79. PubMed | DOI

Trinh DC, Lavenus J, Goh T, Boutte Y, Drogue Q, Vaissayre V, Tellier F, Lucas M, Voss U, Gantet P, Faure JD, Dussert S, Fukaki H, Bennett MJ, Laplaze L, Guyomarc'h S (2019). PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation. Proc Natl Acad Sci U S A, 116:14325-14330. PubMed | DOI

Deruyffelaere C, Purkrtova Z, Bouchez I, Collet B, Cacas JL, Chardot T, Gallois JL, D'Andrea S (2018). PUX10 Is a CDC48A Adaptor Protein That Regulates the Extraction of Ubiquitinated Oleosins from Seed Lipid Droplets in Arabidopsis. Plant Cell, 30:2116-2136. PubMed | DOI

Faure JD, Napier JA (2018). Europe's first and last field trial of gene-edited plants?. Elife, 7:e42379. PubMed | DOI

Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin-Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B (2018). Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo. Plant Methods, 14:10. PubMed | DOI

Zhang R, Chouket R, Plamont MA, Kelemen Z, Espagne A, Tebo AG, Gautier A, Gissot L, Faure JD, Jullien L, Croquette V, Le Saux T (2018). Macroscale fluorescence imaging against autofluorescence under ambient light. Light Sci Appl, 7:97. PubMed | DOI

Cacas JL, Pre M, Pizot M, Cissoko M, Diedhiou I, Jalloul A, Doumas P, Nicole M, Champion A (2017). GhERF-IIb3 regulates the accumulation of jasmonate and leads to enhanced cotton resistance to blight disease. Mol Plant Pathol, 18:825-836. PubMed | DOI

Dolch LJ, Rak C, Perin G, Tourcier G, Broughton R, Leterrier M, Morosinotto T, Tellier F, Faure JD, Falconet D, Jouhet J, Sayanova O, Beaudoin F, Marechal E (2017). A Palmitic Acid Elongase Affects Eicosapentaenoic Acid and Plastidial Monogalactosyldiacylglycerol Levels in Nannochloropsis. Plant Physiol, 173:742-759. PubMed | DOI

Kalmbach L, Hématy K, De Bellis D, Barberon M, Fujita S, Ursache R, Daraspe J, Geldner N (2017). Transient cell-specific EXO70A1 activity in the CASP domain and Casparian strip localization. Nat Plants, 3:17058. PubMed | DOI

Morineau C, Bellec Y, Tellier F, Gissot L, Kelemen Z, Nogué F, Faure JD (2017). Selective gene dosage by CRISPR-Cas9 genome editing in hexaploid Camelina sativa. Plant Biotechnol J, 15:729-739. PubMed | DOI

Querard J, Zhang R, Kelemen Z, Plamont MA, Xie X, Chouket R, Roemgens I, Korepina Y, Albright S, Ipendey E, Volovitch M, Sladitschek HL, Neveu P, Gissot L, Gautier A, Faure JD, Croquette V, Le Saux T, Jullien L (2017). Resonant out-of-phase fluorescence microscopy and remote imaging overcome spectral limitations. Nat Commun, 8:969. PubMed | DOI

Belcram K, Palauqui JC, Pastuglia M (2016). Studying Cell Division Plane Positioning in Early-Stage Embryos 2016. Methods Mol Biol, 1370:183-195. PubMed | DOI

Bure C, Cacas JL, Badoc A, Mongrand S, Schmitter JM (2016). Branched glycosylated inositolphosphosphingolipid structures in plants revealed by MS(3) analysis. J Mass Spectrom, 51:305-308. PubMed | DOI

De Bigault Du Granrut A, Cacas JL (2016). How Very-Long-Chain Fatty Acids Could Signal Stressful Conditions in Plants?. Front Plant Sci, 7:1490. PubMed | DOI

Faure JD, Tepfer M (2016). Camelina, a Swiss knife for plant lipid biotechnology. Ocl, 23:D503. PubMed | DOI

Hématy K, Bellec Y, Podicheti R, Bouteiller N, Anne P, Morineau C, Haslam RP, Beaudoin F, Napier JA, Mockaitis K, Gagliardi D, Vaucheret H, Lange H, Faure JD (2016). The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLoS Genet, 12:e1005817. PubMed | DOI

Michaelson LV, Napier JA, Molino D, Faure JD (2016). Plant sphingolipids: Their importance in cellular organization and adaption. Biochim Biophys Acta, 1861:1329-1335. PubMed | DOI

Morineau C, Gissot L, Bellec Y, Hématy K, Tellier F, Renne C, Haslam R, Beaudoin F, Napier J, Faure JD (2016). Dual Fatty Acid Elongase Complex Interactions in Arabidopsis. PLoS One, 11:e0160631. PubMed | DOI

Anne P, Azzopardi M, Gissot L, Beaubiat S, Hématy K, Palauqui JC (2015). OCTOPUS Negatively Regulates BIN2 to Control Phloem Differentiation in Arabidopsis thaliana. Curr Biol, 25:2584-2590. PubMed | DOI

Boccaccini A, Santopolo S, Capauto D, Lorrai R, Minutello E, Belcram K, Palauqui JC, Costantino P, Vittorioso P (2014). Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination. BMC Plant Biol, 14:200. PubMed | DOI

Julie-Galau S, Bellec Y, Faure JD, Tepfer M (2014). Evaluation of the potential for interspecific hybridization between Camelina sativa and related wild Brassicaceae in anticipation of field trials of GM camelina. Transgenic Res, 23:67-74. PubMed | DOI

Molino D, Van Der Giessen E, Gissot L, Hématy K, Marion J, Barthelemy J, Bellec Y, Vernhettes S, Satiat-Jeunemaitre B, Galli T, Tareste D, Faure JD (2014). Inhibition of very long acyl chain sphingolipid synthesis modifies membrane dynamics during plant cytokinesis. Biochim Biophys Acta, 1842:1422-1430. PubMed | DOI

Roschzttardtz H, Paez-Valencia J, Dittakavi T, Jali S, Reyes FC, Baisa G, Anne P, Gissot L, Palauqui JC, Masson PH, Bednarek SY, Otegui MS (2014). The VASCULATURE COMPLEXITY AND CONNECTIVITY gene encodes a plant-specific protein required for embryo provasculature development. Plant Physiol, 166:889-902. PubMed | DOI

Tellier F, Maia-Grondard A, Schmitz-Afonso I, Faure JD (2014). Comparative plant sphingolipidomic reveals specific lipids in seeds and oil. Phytochemistry, 103:50-58. PubMed | DOI

Trontin C, Kiani S, Corwin JA, Hématy K, Yansouni J, Kliebenstein DJ, Loudet O (2014). A pair of receptor-like kinases is responsible for natural variation in shoot growth response to mannitol treatment in Arabidopsis thaliana. Plant J, 78:121-133. PubMed | DOI

Jolivet P, Acevedo F, Boulard C, D'Andrea S, Faure JD, Kohli A, Nesi N, Valot B, Chardot T (2013). Crop seed oil bodies: from challenges in protein identification to an emerging picture of the oil body proteome. Proteomics, 13:1836-1849. PubMed | DOI

Nikolaev SV, Kolchanov NA, Golushko SK, Palauqui JC, Urban A, Amelina EV, Yurchenko AV, Golushko KS, Zubairova US, Penenko AV, Trubuil A (2013). Modeling of plant embryo morphodynamics at early developmental stages. Russian Journal of Genetics: Applied Research, 3:176-183. PubMed | DOI

Vilaine F, Kerchev P, Clément G, Batailler B, Cayla T, Bill L, Gissot L, Dinant S (2013). Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis. Plant Cell, 25:1689-1708. PubMed | DOI

Bernard A, Domergue F, Pascal S, Jetter R, Renne C, Faure JD, Haslam RP, Napier JA, Lessire R, Joubes J (2012). Reconstitution of plant alkane biosynthesis in yeast demonstrates that Arabidopsis ECERIFERUM1 and ECERIFERUM3 are core components of a very-long-chain alkane synthesis complex. Plant Cell, 24:3106-3118. PubMed | DOI

Bou-Torrent J, Salla-Martret M, Brandt R, Musielak T, Palauqui JC, Martínez-García JF, Wenkel S (2012). ATHB4 and HAT3, two class II HD-ZIP transcription factors, control leaf development in Arabidopsis. Plant Signal Behav, 7:1382-1387. PubMed | DOI

Brandt R, Salla-Martret M, Bou-Torrent J, Musielak T, Stahl M, Lanz C, Ott F, Schmid M, Greb T, Schwarz M, Choi SB, Barton MK, Reinhart BJ, Liu T, Quint M, Palauqui JC, Martínez-García JF, Wenkel S (2012). Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Plant J, 72:31-42. PubMed | DOI

Truernit E, Bauby H, Belcram K, Barthelemy J, Palauqui JC (2012). OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana. Development, 139:1306-1315. PubMed | DOI

Xue W, Ruprecht C, Street N, Hématy K, Chang C, Frommer WB, Persson S, Niittyla T (2012). Paramutation-like interaction of T-DNA loci in Arabidopsis. PLoS One, 7:e51651. PubMed | DOI