Research teams

Modeling and Digital Imaging

MiN 6 members 41 IJPB publications (2006-to date)

IJPB publications (2006-to date) [41]
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Xiao G, Kumar Ro, Komuro Y, Burguet J, Kakarla V, Azizkhanian I, Sheth SA, Williams CK, Zhang XR, Macknicki R, Brumm A, Kawaguchi R, Mai P, Kaneko N, Vinters HV, Carmichael ST, Havton LA, DeCarli C, Hinman JD (2022). IL-17/CXCL5 signaling within the oligovascular niche mediates human and mouse white matter injury. Cell Rep, 41(12):111848. PubMed | DOI
Rampin O, Saint Albin Deliot A, Ouali C, Burguet J, Gry E, Champeil Potokar G, Jérôme N, Davidenko O, Darcel N, Bombail V, Andrey P, Denis I (2022). Dopamine Modulates the Processing of Food Odour in the Ventral Striatum. Biomedicines, 10(5):1126. PubMed | DOI
Haddad-Tovolli R, Altirriba J, Obri A, Sanchez EE, Chivite I, Mila-Guasch M, Ramirez S, Gomez-Valades AG, Pozo M, Burguet J, Velloso LA, Claret M (2020). Pro-opiomelanocortin (POMC) neuron translatome signatures underlying obesogenic gestational malprogramming in mice. Mol Metab, 36:100963. PubMed | DOI
Farmer DGS, Pracejus N, Dempsey B, Turner A, Bokiniec P, Paton JFR, Pickering AE, Burguet J, Andrey P, Goodchild AK, Mcallen RM, Mcmullan S (2019). On the presence and functional significance of sympathetic premotor neurons with collateralized spinal axons in the rat. J Physiol, 597:3407-3423. PubMed | DOI
Selka F, Burguet J, Biot E, Blein T, Laufs P, Andrey P (2019). Surface parameterization and registration for statistical multiscale atlasing of organ development. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, pp. 134-139, Long Beach, CA. DOI
Oughou M, Cunha E, Biot E, Arnaud N, Laufs P, Andrey P, Burguet J (2019). Dynamic atlasing of gene expression domains from individual images. In 16th IEEE International Symposium on Biomedical Imaging (ISBI 2019): From Nano to Macro, pp. 662-665, Venice, Italy, 8-11 April. DOI
Arganda-Carreras I, Manoliu T, Mazuras N, Schulze F, Iglesias JE, Buhler K, Jenett A, Rouyer F, Andrey P (2018). A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. Front Neuroinform, 12:13. PubMed | DOI
Fernandes JB, Duhamel M, Seguela-Arnaud M, Froger N, Girard C, Choinard S, Solier V, De Winne N, De Jaeger G, Gevaert K, Andrey P, Grelon M, Guerois R, Kumar R, Mercier R (2018). FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PLoS Genet, 14:e1007317. PubMed | DOI
Arganda-Carreras I, Andrey P (2017). Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach. Methods Mol Biol, 1563:185-207. PubMed | DOI
Chehensse C, Facchinetti P, Bahrami S, Andrey P, Soler JM, Chretien F, Bernabe J, Clement P, Denys P, Giuliano F (2017). Human spinal ejaculation generator. Ann Neurol, 81:35-45. PubMed | DOI
Selka F, Blein T, Burguet J, Biot E, Laufs P, Andrey P (2017). Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis. In Proceedings of the IEEE International Conference on Computer Vision (ICCV), pp. 56-63, Venice, Italy. DOI
Poulet A, Arganda-Carreras I, Legland D, Probst AV, Andrey P, Tatout C (2015). NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei. Bioinformatics, 31:1144-1146. PubMed | DOI
Silva JVC, Legland D, Cauty C, Kolotuev I, Floury J (2015). Characterization of the microstructure of dairy systems using automated image analysis. Food Hydrocolloids, 44:360-371. PubMed | DOI
Gul-Mohammed J, Arganda-Carreras I, Andrey P, Galy V, Boudier T (2014). A generic classification-based method for segmentation of nuclei in 3D images of early embryos. BMC Bioinformatics, 15:9. PubMed | DOI
Vain T, Crowell EF, Timpano H, Biot E, Desprez T, Mansoori N, Trindade LM, Pagant S, Robert S, Höfte H, Gonneau M, Vernhettes S (2014). The Cellulase KORRIGAN Is Part of the Cellulose Synthase Complex. Plant Physiol, 165:1521-1532. PubMed | DOI
Burguet J, Mailly P, Andrey P (2013). Statistical groupwise comparison of spatial point patterns in biological imaging. In 2013 International Symposium on Biomedical Imaging: From Nano to Macro, pp. 456-459, San Francisco, 7-11 April. DOI
Ernoult-Lange M, Baconnais S, Harper M, Minshall N, Souquere S, Boudier T, Benard M, Andrey P, Pierron G, Kress M, Standart N, Le Cam E, Weil D (2012). Multiple binding of repressed mRNAs by the P-body protein Rck/p54. RNA, 18:1702-1715. PubMed | DOI
Burguet J, Mailly P, Maurin Y, Andrey P (2011). Reconstructing the three-dimensional surface of a branching and merging biological structure from a stack of coplanar contours. In Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011): From Nano to Macro, pp. 602-605, Chicago, March 30-April 2. DOI
Andrey P, Kieu K, Kress C, Lehmann G, Tirichine L, Liu Z, Biot E, Adenot PG, Hue-Beauvais C, Houba-Herin N, Duranthon V, Devinoy E, Beaujean N, Gaudin V, Maurin Y, Debey P (2010). Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol, 6:e1000853. PubMed | DOI
Gaudin V, Andrey P, Devinoy E, Kress C, Kieu K, Beaujean N, Maurin Y, Debey P (2009). Modeling the 3D functional architecture of the nucleus in animal and plant kingdoms. C R Biol, 332:937-946. PubMed | DOI
Biot E, Crowell E, Höfte H, Maurin Y, Vernhettes S, Andrey P (2008). A new filter for spot extraction in N-dimensional biological imaging. In Fifth IEEE International Symposium on Biomedical Imaging (ISBI'08): From Nano to Macro, pp. 975-978, Paris, May 14-17. DOI
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