Publications

Perumal S, Waminal NE, Lee J, Choi BS, Kim HH, Grandbastien MA, Yang TJ (2017). Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution. Sci Rep, 7:17986. PubMed | DOI

Querard J, Zhang R, Kelemen Z, Plamont MA, Xie X, Chouket R, Roemgens I, Korepina Y, Albright S, Ipendey E, Volovitch M, Sladitschek HL, Neveu P, Gissot L, Gautier A, Faure JD, Croquette V, Le Saux T, Jullien L (2017). Resonant out-of-phase fluorescence microscopy and remote imaging overcome spectral limitations. Nat Commun, 8:969. PubMed | DOI

Rigault M, Buellet A, Masclaux-Daubresse C, Fagard M, Chardon F, Dellagi A (2017). Quantitative Methods to Assess Differential Susceptibility of Arabidopsis thaliana Natural Accessions to Dickeya dadantii. Front Plant Sci, 8:394. PubMed | DOI

Rizzolatti C, Bury P, Tatara E, Pin PA, Rodde N, Berges H, Budar F, Mireau H, Gielen JJL (2017). Map-based cloning of the fertility restoration locus Rfm1 in cultivated barley (Hordeum vulgare). Euphytica, 213:276. PubMed | DOI

Robert T, De Massy B, Grelon M (2017). [TopoVIL : a molecular scissor essential for reproduction]. Med Sci (Paris), 33:512-518. PubMed | DOI

Rosspopoff O, Chelysheva L, Saffar J, Lecorgne L, Gey D, Caillieux E, Colot V, Roudier F, Hilson P, Berthomé R, Da Costa M, Rech P (2017). Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development. Development, 144:1187-1200. PubMed | DOI

Schaefer E, Belcram K, Uyttewaal M, Duroc Y, Goussot M, Legland D, Laruelle E, De Tauzia-Moreau ML, Pastuglia M, Bouchez D (2017). The preprophase band of microtubules controls the robustness of division orientation in plants. Science, 356:186-189. PubMed | DOI

Seguela-Arnaud M, Choinard S, Larcheveque C, Girard C, Froger N, Crismani W, Mercier R (2017). RMI1 and TOP3alpha limit meiotic CO formation through their C-terminal domains. Nucleic Acids Res, 45:1860-1871. PubMed | DOI

Serin EaR, Snoek LB, Nijveen H, Willems LaJ, Jiménez-Gómez JM, Hilhorst HWM, Ligterink W (2017). Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 x Shahdara RIL Population. Front Genet, 8:201. PubMed | DOI

Sibout R (2017). Crop breeding: Turning a lawn into a field. Nat Plants, 3:17060. PubMed | DOI

Sibout R, Proost S, Hansen BO, Vaid N, Giorgi FM, Ho-Yue-Kuang S, Legée F, Cezart L, Bouchabké-Coussa O, Soulhat C, Provart N, Pasha A, Le Bris P, Roujol D, Höfte H, Jamet E, Lapierre C, Persson S, Mutwil M (2017). Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. New Phytol, 215:1009-1025. PubMed | DOI

Simonovi? Radosavljevi? J, Bogdanovi? Pristov J, Lj. Mitrovi? A, Steinbach G, Mouille G, Tufegdži? S, Maksimovi? V, Mutavdži? D, Janoševi? D, Vukovi? M, Garab G, Radoti? K (2017). Parenchyma cell wall structure in twining stem of Dioscorea balcanica. Cellulose, 24:4653-4669. PubMed | DOI

Soler M, Plasencia A, Larbat R, Pouzet C, Jauneau A, Rivas S, Pesquet E, Lapierre C, Truchet I, Grima-Pettenati J (2017). The Eucalyptus linker histone variant EgH1.3 cooperates with the transcription factor EgMYB1 to control lignin biosynthesis during wood formation. New Phytol, 213:287-299. PubMed | DOI

Soyk S, Muller NA, Park SJ, Schmalenbach I, Jiang K, Hayama R, Zhang L, Van Eck J, Jiménez-Gómez JM, Lippman ZB (2017). Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nat Genet, 49:162-168. PubMed | DOI

Suzuki T, Nunes MA, Espana MU, Namin HH, Jin P, Bensoussan N, Zhurov V, Rahman T, De Clercq R, Hilson P, Grbic V, Grbic M (2017). RNAi-based reverse genetics in the chelicerate model Tetranychus urticae: A comparative analysis of five methods for gene silencing. PLoS One, 12:e0180654. PubMed | DOI

Taochy C, Gursanscky NR, Cao J, Fletcher SJ, Dressel U, Mitter N, Tucker MR, Koltunow AMG, Bowman JL, Vaucheret H, Carroll BJ (2017). A Genetic Screen for Impaired Systemic RNAi Highlights the Crucial Role of DICER-LIKE 2. Plant Physiol, 175:1424-1437. PubMed | DOI

Van Acker R, Déjardin A, Desmet S, Hoengenaert L, Vanholme R, Morreel K, Laurans F, Kim H, Santoro N, Foster C, Goeminne G, Legée F, Lapierre C, Pilate G, Ralph J, Boerjan W (2017). Different Routes for Conifer- and Sinapaldehyde and Higher Saccharification upon Deficiency in the Dehydrogenase CAD1. Plant Physiol, 175:1018-1039. PubMed | DOI

Van Der Does D, Boutrot F, Engelsdorf T, Rhodes J, Mckenna JF, Vernhettes S, Koevoets I, Tintor N, Veerabagu M, Miedes E, Segonzac C, Roux M, Breda AS, Hardtke CS, Molina A, Rep M, Testerink C, Mouille G, Höfte H, Hamann T, Zipfel C (2017). The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and biotic stresses. PLoS Genet, 13:e1006832. PubMed | DOI

Van Gijsegem F, Pedron J, Patrit O, Simond-Cote E, Maia-Grondard A, Petriacq P, Gonzalez R, Blottiere L, Kraepiel Y (2017). Manipulation of ABA Content in Arabidopsis thaliana Modifies Sensitivity and Oxidative Stress Response to Dickeya dadantii and Influences Peroxidase Activity. Front Plant Sci, 8:456. PubMed | DOI

Verdin E, Wipf-Scheibel C, Gognalons P, Aller F, Jacquemond M, Tepfer M (2017). Sequencing viral siRNAs to identify previously undescribed viruses and viroids in a panel of ornamental plant samples structured as a matrix of pools. Virus Res, 241:19-28. PubMed | DOI

Verzeaux J, Hirel B, Dubois F, Lea PJ, Tétu T (2017). Agricultural practices to improve nitrogen use efficiency through the use of arbuscular mycorrhizae: Basic and agronomic aspects. Plant Sci, 264:48-56. PubMed | DOI

Verzeaux J, Nivelle E, Roger D, Hirel B, Dubois F, Tétu T (2017). Spore Density of Arbuscular Mycorrhizal Fungi is Fostered by Six Years of a No-Till System and is Correlated with Environmental Parameters in a Silty Loam Soil. Agronomy, 7:38. PubMed | DOI

Villegente M, Marmey P, Job C, Galland M, Cueff G, Godin B, Rajjou L, Balliau T, Zivy M, Fogliani B, Sarramegna-Burtet V, Job D (2017). A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes, 5:19. PubMed | DOI

Voxeur A, Soubigou-Taconnat L, Legée F, Sakai K, Antelme S, Durand-Tardif M, Lapierre C, Sibout R (2017). Altered lignification in mur1-1 a mutant deficient in GDP-L-fucose synthesis with reduced RG-II cross linking. PLoS One, 12:e0184820. PubMed | DOI

Wang C, Aube F, Planchard N, Quadrado M, Dargel-Graffin C, Nogué F, Mireau H (2017). The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3 end of its 5-half intron. Nucleic Acids Res, 45:6119-6134. PubMed | DOI

Woerlen N, Allam G, Popescu A, Corrigan L, Pautot V, Hepworth SR (2017). Repression of BLADE-ON-PETIOLE genes by KNOX homeodomain protein BREVIPEDICELLUS is essential for differentiation of secondary xylem in Arabidopsis root. Planta, 245:1079-1090. PubMed | DOI

Wu YY, Hou BH, Lee WC, Lu SH, Yang CJ, Vaucheret H, Chen HM (2017). DCL2- and RDR6-dependent transitive silencing of SMXL4 and SMXL5 in Arabidopsis dcl4 mutants causes defective phloem transport and carbohydrate over-accumulation. Plant J, 90:1064-1078. PubMed | DOI

Xu W, Bobet S, Le Gourrierec J, Grain D, De Vos D, Berger A, Salsac F, Kelemen Z, Boucherez J, Rolland A, Mouille G, Routaboul JM, Lepiniec L, Dubos C (2017). TRANSPARENT TESTA 16 and 15 act through different mechanisms to control proanthocyanidin accumulation in Arabidopsis testa. J Exp Bot, 68:2859-2870. PubMed | DOI

Xu Y, Séchet J, Wu Y, Fu Y, Zhu L, Li J, Zhang Y, Gineau E, Gaertner C, Zhou J, Fan X, Liu Y, Zhou L, Mouille G, Lin X (2017). Rice Sucrose Partitioning Mediated by a Putative Pectin Methyltransferase and Homogalacturonan Methylesterification. Plant Physiol, 174:1595-1608. PubMed | DOI

Zarattini M, Launay A, Farjad M, Wenes E, Taconnat L, Boutet S, Bernacchia G, Fagard M (2017). The bile acid deoxycholate elicits defences in Arabidopsis and reduces bacterial infection. Mol Plant Pathol, 18:540-554. PubMed | DOI

Zhang M, Lapierre C, Nouxman NL, Nieuwoudt MK, Smith BG, Chavan RR, Mcardle BH, Harris PJ (2017). Location and characterization of lignin in tracheid cell walls of radiata pine (Pinus radiata D. Don) compression woods. Plant Physiol Biochem, 118:187-198. PubMed | DOI

Selka F, Blein T, Burguet J, Biot E, Laufs P, Andrey P (2017). Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis. In Proceedings of the IEEE International Conference on Computer Vision (ICCV), pp. 56-63, Venice, Italy. DOI

Avila-Ospina L, Marmagne A, Soulay F, Masclaux-Daubresse C (2016). Identification of Barley (Hordeum vulgare L.) Autophagy Genes and Their Expression Levels during Leaf Senescence, Chronic Nitrogen Limitation and in Response to Dark Exposure. Agronomy, 6:15. PubMed | DOI

Baker LA, Horbury MD, Greenough SE, Allais F, Walsh PS, Habershon S, Stavros VG (2016). Ultrafast Photoprotecting Sunscreens in Natural Plants. J Phys Chem Lett, 7:56-61. PubMed | DOI

Bar M, Israeli A, Levy M, Ben Gera H, Jiménez-Gómez JM, Kouril S, Tarkowski P, Ori N (2016). CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling. Plant Cell, 28:1602-1615. PubMed | DOI

Bastien R, Legland D, Martin M, Fregosi L, Peaucelle A, Douady S, Moulia B, Höfte H (2016). KymoRod: a method for automated kinematic analysis of rod-shaped plant organs. Plant J, 88:468-475. PubMed | DOI

Baud S, Kelemen Z, Thévenin J, Boulard C, Blanchet S, To A, Payre M, Berger N, Effroy-Cuzzi D, Franco-Zorrilla JM, Godoy M, Solano R, Thevenon E, Parcy F, Lepiniec L, Dubreucq B (2016). Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol, 171:1099-1112. PubMed | DOI

Belcram K, Palauqui JC, Pastuglia M (2016). Studying Cell Division Plane Positioning in Early-Stage Embryos 2016. Methods Mol Biol, 1370:183-195. PubMed | DOI

Biot E, Cortizo M, Burguet J, Kiss A, Oughou M, Maugarny-Calès A, Goncalves B, Adroher B, Andrey P, Boudaoud A, Laufs P (2016). Multiscale quantification of morphodynamics: MorphoLeaf software for 2D shape analysis. Development, 143:3417-3428. PubMed | DOI

Biot E, Crowell E, Burguet J, Höfte H, Vernhettes S, Andrey P (2016). Strategy and software for the statistical spatial analysis of 3D intracellular distributions. Plant J, 87:230-242. PubMed | DOI

Boccaccini A, Lorrai R, Ruta V, Frey A, Boutet S, Marion-Poll A, Tarkowska D, Strnad M, Costantino P, Vittorioso P (2016). The DAG1 transcription factor negatively regulates the seed-to-seedling transition in Arabidopsis acting on ABA and GA levels. BMC Plant Biol, 16:198. PubMed | DOI

Broussard O, Petit M, Elie N, Baumberger S, Arnaud A, Ducrot PH, Allais F (2016). Monitoring of free phenol content in lignosulfonates by ClO2 titration and UV difference spectroscopy. Holzforschung, 70:719-724. PubMed | DOI

Bure C, Cacas JL, Badoc A, Mongrand S, Schmitter JM (2016). Branched glycosylated inositolphosphosphingolipid structures in plants revealed by MS(3) analysis. J Mass Spectrom, 51:305-308. PubMed | DOI

Choi K, Reinhard C, Serra H, Ziolkowski PA, Underwood CJ, Zhao X, Hardcastle TJ, Yelina NE, Griffin C, Jackson M, Mézard C, Mcvean G, Copenhaver GP, Henderson IR (2016). Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. PLoS Genet, 12:e1006179. PubMed | DOI

Cifuentes M, Jolivet S, Cromer L, Harashima H, Bulankova P, Renne C, Crismani W, Nomura Y, Nakagami H, Sugimoto K, Schnittger A, Riha K, Mercier R (2016). TDM1 Regulation Determines the Number of Meiotic Divisions. PLoS Genet, 12:e1005856. PubMed | DOI

Cormier F, Foulkes J, Hirel B, Gouache D, Moënne-Loccoz Y, Le Gouis J, Ordon F (2016). Breeding for increased nitrogen-use efficiency: a review for wheat (T. aestivumL.). Plant Breeding, 135:255-278. PubMed | DOI

D'Andrea S (2016). Lipid droplet mobilization: The different ways to loosen the purse strings. Biochimie, 120:17-27. PubMed | DOI

David LC, Berquin P, Kanno Y, Seo M, Daniel-Vedele F, Ferrario-Méry S (2016). N availability modulates the role of NPF3.1, a gibberellin transporter, in GA-mediated phenotypes in Arabidopsis. Planta, 244:1315-1328. PubMed | DOI

De Bigault Du Granrut A, Cacas JL (2016). How Very-Long-Chain Fatty Acids Could Signal Stressful Conditions in Plants?. Front Plant Sci, 7:1490. PubMed | DOI

De Marco F, Pagliari L, Degola F, Buxa SV, Loschi A, Dinant S, Le Hir R, Morin H, Santi S, Musetti R (2016). Combined microscopy and molecular analyses show phloem occlusions and cell wall modifications in tomato leaves in response to 'Candidatus Phytoplasma solani'. J Microsc, 263:212-225. PubMed | DOI